XLOC_002908 (supt20)


Basic Information

Item Value
gene id XLOC_002908
gene name supt20
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 35012094 ~ 35052198 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00005384
GGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACACAGCAAGCACAATGCAACAAGTCCTAGAATATGCATTGGATCGGGCTGAGGTATTTGTTTCATCTTATTCTGTATTATATTGTGCATTTATTGTACGTTATGGTATTTAATTTGTGACCAACTGTAAATTgtaattttctgttattttgccaattatttattaatgtatttatatctCCTTCAGTACATTGTAGAAAGTGCTCGTCAGCGACCAGCGAAGAGGCGGGTGTCCTCCAGCGGAAGGAAATCCTTATATCAGAAACTTTATGAATTGTACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGGAGAAATGTGAATCTACTACAGAAACTGGTCTCACAGGAGTCCGTCTCGTGTCTGGTGGTTAATCTGTACCCTGGCAATGAAGGATACTCGCTTATGCTTAGAGGAAAAAACGGATCTGATTCAGAAACGATTCGGCTTCGCTATGAAGAGGGTGAGTTACTGGAATACCTGGATGCAGAGGAGCTGCCGCCCATCCTTGTAGACCTTCTGGAAAAATCACAGGTGAATATTTTCCACTGTGGCTGTGTGATAGCCGAGGTCAGAGACTACAGACAGTCCGGAAACACAAAGATGCCCACATACCAGAGCCGGCACATCCTGCTGAGACCCACTATGCAGACCCTGATCTGTGATGTTCACGCCATGACGAGTGACCACAAGTGGACGCAGGATGATAAACTTCAGCTGGAGAGTCAGTTGATTCTGGCTACAGCAGAGCCTCTGTGTCTCGACCCCTCCATCTCTGTCAGCTGCACCACCAACCGTCTGCTCTACAACAAACAGAAGATGAACACGCGCTCCATGAAACGATGTTTTAGGAGGCATTCGCGAGCAGCTCTGAACAGACAGCAGGAAATCATGAGCCACTGTCCTGCACTGCCGCAGCTTCGACTGCTGGATTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCCTCCATAGACCTGAAGATCTCCAAAGCTGGAAACTGTGTGGACATGTGGAAACAGAGCAGTTGTCAGCTGACCACCCCTGCAGAAATCGACGTGGAGAAATACGCAGTGGCAGAGAACGCTGCCAAACTCGATGACACTCAGCCCACTGTTTGGCCTGCGCAGgacataaGGGACGACTACACTTTCGAGTGTGAAATGGGAGGCCAACTGCAAAGAACAAAAGTCACAATCTTCCAGTCTATGGGAGACCCGCTGGTCTACGGAAAAATCTACAGCGCCAAAGACTCCAAATTAGAGGAAGACGTCACAGACCTGCACCTCATTCACCCACCATTCCTCATAGGTTCAAAGACAGATGCTGATCGGTTTCTGATGCAGTACAAAGAGGTGTATGAACGAGACGTCAAGTGTCAGGTCAAGATGTTGCACAACTCCCAGAGCCAGCTCTCGCCCTCCAGAGAGAACGAGACTGATGGTTTCTCTGCTCTGGTCCAGTCTTCGGTTTTAGGAAAAGGTGTCAAACACAGACCTCCTCCTATCAAATTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGGTAACCCGTACAGTACACAGGCCTCCAGTGGGCATCTGAAGTGCCCGACTCCTCCACCCTCAAAGAATCAGTCGCTCTCCCGGAAACACTCCATAGAGCTCGGCCTGCTGTCTCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCCACGCCCACCCCCACAAACACGCCTTGTTCAACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCCGTCACGCCCACCCCACAGGACCCCACACTTCCACAGCCGCCCACCCTTTTGACGCCTTTTGCCCAGCAGCAGATGACTTTGCCCGTCATGACCATCCCCCTGCCCACATCCAGCACCACGTCTTCACAGGTCATGACCAACCCTGCGGGTCTCAACTTCATCAACGTAGTGGGCTCAGTTTGCAGTCCGCAGACGCTGATGAGTGGCTCTAACTCGATGCTGGGTTGTAGTCCTGGGACTCTGGCATCTGGTATCCCACTGAGTGGACTTTTACCTTCTGGCGGACTCATGTCTGGAACTCTGCCTGCCATGCAGCCTGCAGCTCCAGGAGGTGGGCCTTTCGGTCTGAACAGTAGTCCAGGACTCCGGCCGCTCAACCTCCTCCAGcttcCTACGGGACCACTGATATTTAACTCACTACAGCAGCAGCAGTTTTCCCCTCAACAGCAAAGCAGTCAGTCGGCCACATCCAGCCCTCAGCAGCAGGGGGAGTCGGCTGACGGGGGTCTGACGGCAGAGCAGGGTCTGTCAGCGCAGCAGACGGCCGTCATTAATCTTACCGGCGTCGGAGGATTCATGTCTCCTCAAGCAGCAGTGCTGTCCCAGCTGGGTTGTGGTCTGGAGGGGTCCGGGCCCAGCTTACCGTCCCCGAGGCTCCAGCAACAGCACCAGCCACAGATCCAATTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGGGTATGGCAGTGGGGGCGGCGGCACAGGCGGCTCTGCCACGCCCACATTCCGCCAACCAGCCAAAAAGTAAACGGAAGCGCAGCACGCCGCAGCCCCTCTCCAAATCATGA
>TCONS_00005383
GGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACACAGCAAGCACAATGCAACAAGTCCTAGAATATGCATTGGATCGGGCTGAGTACATTGTAGAAAGTGCTCGTCAGCGACCAGCGAAGAGGCGGGTGTCCTCCAGCGGAAGGAAATCCTTATATCAGAAACTTTATGAATTGTACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGGAGAAATGTGAATCTACTACAGAAACTGGTCTCACAGGAGTCCGTCTCGTGTCTGGTGGTTAATCTGTACCCTGGCAATGAAGGATACTCGCTTATGCTTAGAGGAAAAAACGGATCTGATTCAGAAACGATTCGGCTTCGCTATGAAGAGGGTGAGTTACTGGAATACCTGGATGCAGAGGAGCTGCCGCCCATCCTTGTAGACCTTCTGGAAAAATCACAGGTGAATATTTTCCACTGTGGCTGTGTGATAGCCGAGGTCAGAGACTACAGACAGTCCGGAAACACAAAGATGCCCACATACCAGAGCCGGCACATCCTGCTGAGACCCACTATGCAGACCCTGATCTGTGATGTTCACGCCATGACGAGTGACCACAAGTGGACGCAGGATGATAAACTTCAGCTGGAGAGTCAGTTGATTCTGGCTACAGCAGAGCCTCTGTGTCTCGACCCCTCCATCTCTGTCAGCTGCACCACCAACCGTCTGCTCTACAACAAACAGAAGATGAACACGCGCTCCATGAAACGATGTTTTAGGAGGCATTCGCGAGCAGCTCTGAACAGACAGCAGGAAATCATGAGCCACTGTCCTGCACTGCCGCAGCTTCGACTGCTGGATTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCCTCCATAGACCTGAAGATCTCCAAAGCTGGAAACTGTGTGGACATGTGGAAACAGAGCAGTTGTCAGCTGACCACCCCTGCAGAAATCGACGTGGAGAAATACGCAGTGGCAGAGAACGCTGCCAAACTCGATGACACTCAGCCCACTGTTTGGCCTGCGCAGgacataaGGGACGACTACACTTTCGAGTGTGAAATGGGAGGCCAACTGCAAAGAACAAAAGTCACAATCTTCCAGTCTATGGGAGACCCGCTGGTCTACGGAAAAATCTACAGCGCCAAAGACTCCAAATTAGAGGAAGACGTCACAGACCTGCACCTCATTCACCCACCATTCCTCATAGGTTCAAAGACAGATGCTGATCGGTTTCTGATGCAGTACAAAGAGGTGTATGAACGAGACGTCAAGTGTCAGGTCAAGATGTTGCACAACTCCCAGAGCCAGCTCTCGCCCTCCAGAGAGAACGAGACTGATGGTTTCTCTGCTCTGGTCCAGTCTTCGGTTTTAGGAAAAGGTGTCAAACACAGACCTCCTCCTATCAAATTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGGTAACCCGTACAGTACACAGGCCTCCAGTGGGCATCTGAAGTGCCCGACTCCTCCACCCTCAAAGAATCAGTCGCTCTCCCGGAAACACTCCATAGAGCTCGGCCTGCTGTCTCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCCACGCCCACCCCCACAAACACGCCTTGTTCAACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCCGTCACGCCCACCCCACAGGACCCCACACTTCCACAGCCGCCCACCCTTTTGACGCCTTTTGCCCAGCAGCAGATGACTTTGCCCGTCATGACCATCCCCCTGCCCACATCCAGCACCACGTCTTCACAGGTCATGACCAACCCTGCGGGTCTCAACTTCATCAACGTAGTGGGCTCAGTTTGCAGTCCGCAGACGCTGATGAGTGGCTCTAACTCGATGCTGGGTTGTAGTCCTGGGACTCTGGCATCTGGTATCCCACTGAGTGGACTTTTACCTTCTGGCGGACTCATGTCTGGAACTCTGCCTGCCATGCAGCCTGCAGCTCCAGGAGGTGGGCCTTTCGGTCTGAACAGTAGTCCAGGACTCCGGCCGCTCAACCTCCTCCAGcttcCTACGGGACCACTGATATTTAACTCACTACAGCAGCAGCAGTTTTCCCCTCAACAGCAAAGCAGTCAGTCGGCCACATCCAGCCCTCAGCAGCAGGGGGAGTCGGCTGACGGGGGTCTGACGGCAGAGCAGGGTCTGTCAGCGCAGCAGACGGCCGTCATTAATCTTACCGGCGTCGGAGGATTCATGTCTCCTCAAGCAGCAGTGCTGTCCCAGCTGGGTTGTGGTCTGGAGGGGTCCGGGCCCAGCTTACCGTCCCCGAGGCTCCAGCAACAGCACCAGCCACAGATCCAATTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGGGTATGGCAGTGGGGGCGGCGGCACAGGCGGCTCTGCCACGCCCACATTCCGCCAACCAGCCAAAAAGTAAACGGAAGCGCAGCACGCCGCAGCCCCTCTCCAAATCATGA
>TCONS_00005385
AATGGCTGCTGTGAGTTTTTTTCATTGAAGGCACTGGAACATTTACTCCGCTTCTTGCTTCGGATTTCCAGCCTGTGGCGATGCAACTCGACTGGGCTTGAATGGTGTGTTTGTGGAGGTGACAGTGCTGGTGTAACACAACATCGCCTCCTGTCACACAGCAAGCACAATGCAACAAGTCCTAGAATATGCATTGGATCGGGCTGAGTACATTGTAGAAAGTGCTCGTCAGCGACCAGCGAAGAGGCGGGTGTCCTCCAGCGGAAGGAAATCCTTATATCAGAAACTTTATGAATTGTACATTGAAGAGTGTGAAAAAGAACCAGAGTTGAAGAAACTGAGGAGAAATGTGAATCTACTACAGAAACTGGTCTCACAGGAGTCCGTCTCGTGTCTGGTGGTTAATCTGTACCCTGGCAATGAAGGATACTCGCTTATGCTTAGAGGAAAAAACGGATCTGATTCAGAAACGATTCGGCTTCGCTATGAAGAGGGTGAGTTACTGGAATACCTGGATGCAGAGGAGCTGCCGCCCATCCTTGTAGACCTTCTGGAAAAATCACAGGTGAATATTTTCCACTGTGGCTGTGTGATAGCCGAGGTCAGAGACTACAGACAGTCCGGAAACACAAAGATGCCCACATACCAGAGCCGGCACATCCTGCTGAGACCCACTATGCAGACCCTGATCTGTGATGTTCACGCCATGACGAGTGACCACAAGTGGACGCAGGATGATAAACTTCAGCTGGAGAGTCAGTTGATTCTGGCTACAGCAGAGCCTCTGTGTCTCGACCCCTCCATCTCTGTCAGCTGCACCACCAACCGTCTGCTCTACAACAAACAGAAGATGAACACGCGCTCCATGAAACGATGTTTTAGGAGGCATTCGCGAGCAGCTCTGAACAGACAGCAGGAAATCATGAGCCACTGTCCTGCACTGCCGCAGCTTCGACTGCTGGATTACCTGCAGAGGAGGAAAGAGAGGAAACCTGCTCCCTCCATAGACCTGAAGATCTCCAAAGCTGGAAACTGTGTGGACATGTGGAAACAGAGCAGTTGTCAGCTGACCACCCCTGCAGAAATCGACGTGGAGAAATACGCAGTGGCAGAGAACGCTGCCAAACTCGATGACACTCAGCCCACTGTTTGGCCTGCGCAGgacataaGGGACGACTACACTTTCGAGTGTGAAATGGGAGGCCAACTGCAAAGAACAAAAGTCACAATCTTCCAGTCTATGGGAGACCCGCTGGTCTACGGAAAAATCTACAGCGCCAAAGACTCCAAATTAGAGGAAGACGTCACAGACCTGCACCTCATTCACCCACCATTCCTCATAGGTTCAAAGACAGATGCTGATCGGTTTCTGATGCAGTACAAAGAGGTGTATGAACGAGACGTCAAGTGTCAGGTCAAGATGTTGCACAACTCCCAGAGCCAGCTCTCGCCCTCCAGAGAGAACGAGACTGATGGTTTCTCTGCTCTGGTCCAGTCTTCGGTTTTAGGAAAAGGTGTCAAACACAGACCTCCTCCTATCAAATTGCCAGCCGGCTCAGCCTGCGCCTCCTCAGGTGAGATACACTTTAACTCCGGTAACCCGTACAGTACACAGGCCTCCAGTGGGCATCTGAAGTGCCCGACTCCTCCACCCTCAAAGAATCAGTCGCTCTCCCGGAAACACTCCATAGAGCTCGGCCTGCTGTCTCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCCACGCCCACCCCCACAAACACGCCTTGTTCAACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCCGTCACGCCCACCCCACAGGACCCCACACTTCCACAGCCGCCCACCCTTTTGACGCCTTTTGCCCAGCAGCAGATGACTTTGCCCGTCATGACCATCCCCCTGCCCACATCCAGCACCACGTCTTCACAGGTCATGACCAACCCTGCGGGTCTCAACTTCATCAACGTAGTGGGCTCAGTTTGCAGTCCGCAGACGCTGATGAGTGGCTCTAACTCGATGCTGGGTTGTAGTCCTGGGACTCTGGCATCTGGTATCCCACTGAGTGGACTTTTACCTTCTGGCGGACTCATGTCTGGAACTCTGCCTGCCATGCAGCCTGCAGCTCCAGGAGGTGGGCCTTTCGGTCTGAACAGTAGTCCAGGACTCCGGCCGCTCAACCTCCTCCAGcttcCTACGGGACCACTGATATTTAACTCACTACAGCAGCAGCAGTTTTCCCCTCAACAGCAAAGCAGTCAGTCGGCCACATCCAGCCCTCAGCAGCAGGGGGAGTCGGCTGACGGGGGTCTGACGGCAGAGCAGGGTCTGTCAGCGCAGCAGACGGCCGTCATTAATCTTACCGGCGTCGGAGGATTCATGTCTCCTCAAGCAGCAGTGCTGTCCCAGCTGGGTTGTGGTCTGGAGGGGTCCGGGCCCAGCTTACCGTCCCCGAGGCTCCAGCAACAGCACCAGCCACAGATCCAATTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGGGTATGGCAGTGGGGGCGGCGGCACAGGCGGCTCTGCCACGCCCACATTCCGCCAACCAGCCAAAAAGTAAACGGAAGCGCAGCACGCCGCAGCCCCTCTCCAAATCATGA
>TCONS_00005386
TCGGCCTGCTGTCTCCTGCTGCTCTCTCGCCCATGCAGAGATCAGGTACTCCCAAGCCCTCCACGCCCACCCCCACAAACACGCCTTGTTCAACGCCACACCCTGCCGATGTTCAGAGTGCCACGCCCTCCGTCACGCCCACCCCACAGGACCCCACACTTCCACAGCCGCCCACCCTTTTGACGCCTTTTGCCCAGCAGCAGATGACTTTGCCCGTCATGACCATCCCCCTGCCCACATCCAGCACCACGTCTTCACAGGTCATGACCAACCCTGCGGGTCTCAACTTCATCAACGTAGTGGGCTCAGTTTGCAGTCCGCAGACGCTGATGAGTGGCTCTAACTCGATGCTGGGTTGTAGTCCTGGGACTCTGGCATCTGGTATCCCACTGAGTGGACTTTTACCTTCTGGCGGACTCATGTCTGGAACTCTGCCTGCCATGCAGCCTGCAGCTCCAGGAGGTGGGCCTTTCGGTCTGAACAGTAGTCCAGGACTCCGGCCGCTCAACCTCCTCCAGcttcCTACGGGACCACTGATATTTAACTCACTACAGCAGCAGCAGTTTTCCCCTCAACAGCAAAGCAGTCAGTCGGCCACATCCAGCCCTCAGCAGCAGGGGGAGTCGGCTGACGGGGGTCTGACGGCAGAGCAGGGTCTGTCAGCGCAGCAGACGGCCGTCATTAATCTTACCGGCGTCGGAGGATTCATGTCTCCTCAAGCAGCAGTTGCAATTCTTGCAGCACCAAATGCAACAGCAGCAAATGG

Function

symbol description
supt20 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component).

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0000124 SAGA complex cellular_component
GO:0003712 transcription coregulator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-091204-264 Predicted to enable transcription coregulator activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of SAGA complex. Orthologous to human SUPT20H (SPT20 homolog, SAGA complex component).

Ensembl:

ensembl_id ENSDARG00000078658

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00005384 False 2678 mRNA 0.53 22 35012094 35051691
TCONS_00005383 False 2544 mRNA 0.54 23 35012094 35051691
TCONS_00005385 False 2659 mRNA 0.54 24 35012094 35052198
TCONS_00005386 True 766 mRNA 0.59 7 35012204 35030673

Neighbor

gene id symbol gene type direction distance location
XLOC_002907 smad9 coding downstream 9363 34960751 ~ 35002731 (-)
XLOC_002906 CT573139.2 coding downstream 52916 34951060 ~ 34959178 (-)
XLOC_002905 sparta coding downstream 95886 34889328 ~ 34916208 (-)
XLOC_002904 ccdc169 coding downstream 123041 34872195 ~ 34889053 (-)
XLOC_002903 dclk1a coding downstream 140357 34737322 ~ 34871737 (-)
XLOC_002909 NA coding upstream 2083 35054281 ~ 35058444 (-)
XLOC_002910 C10H21orf91 coding upstream 7658 35059856 ~ 35108683 (-)
XLOC_002911 ripk4 coding upstream 61955 35114153 ~ 35153388 (-)
XLOC_002912 BX465844.1 coding upstream 107812 35160010 ~ 35164291 (-)
XLOC_002913 pom121 coding upstream 117446 35169644 ~ 35186310 (-)
XLOC_002902 BX510654.1 non-coding downstream 684700 34327262 ~ 34327394 (-)
XLOC_002900 NA non-coding downstream 813528 34196782 ~ 34198566 (-)
XLOC_002891 BX569785.1 non-coding downstream 1131730 33876131 ~ 33880364 (-)
XLOC_002890 NA non-coding downstream 1347305 33663165 ~ 33664789 (-)
XLOC_002917 NA non-coding upstream 260694 35312892 ~ 35321637 (-)
XLOC_002919 NA non-coding upstream 377306 35429504 ~ 35431655 (-)
XLOC_002922 BX663516.3 non-coding upstream 568135 35620333 ~ 35620449 (-)

Expression


Co-expression Network