G1025520 (LOC100380868)


Basic Information

Item Value
gene id G1025520
gene name LOC100380868
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 83636995 ~ 83644402 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1167145
tctgacaaaactgcacattttagagtggccttttattgtccccaaaaCACTGGTCTAGTCTACACCTCTAGTCTAGTGTCCATTCTCTCACCAGGCAGGACGGCTGTGAGGACTTCCTGCATGTTGGAGACGATCTTTTGTCTGTTCTCTACATCCTGGtcactcatccccctctctctgaccacGCCCTCCAGGGCCATGCCCACTGCTGCCACCTGCTCTGCCCTGGGGGGCGCAATCTCCGTCAGCATCTCCTCCTCACAACGCTCCTTGGCTCTCCTCTTGTGCCACTTGTCTTTCATGTGTCTGTGAGCGTCAGAGACAGAGTCCAGCAGTAcctcacacagagagcaggagTAGACAGCACTGGGGTTACTGTGggacctCTTCTTCAGACGGAAGATCTTCTCTCTGCCAATCTTGTCCTCCGCCTGTTTCAGTCCCAGCAGCTCTTTGGCTGACAGAGCCGACTCATCCACCACCGGCCCATGGTCCTCCTCACCTAGACCCCGCCTCCAGTTATGGTTTCTACGATTCCTGCCCCCTGGGAGCACACAAACTATGTTAGCCATAGTCCTCCTTCCCCCGCGGAGACAAAAAAAACGACGTTACCTAGAGCACTTCACACACTTTCATGACTCCCCCCGCTGTGTTCGAGACCATTACATCCGTgatgtatcatgggtaaattgtgactggctgatctacaaataata

Function

NR:

description
terminal uridylyltransferase 7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1167145 True 716 lncRNA 0.53 3 83636995 83644402

Neighbor

gene id symbol gene type direction distance location
LOC110536498 LOC105030224 coding downstream 275981 83341427 ~ 83361014 (-)
LOC110536507 LOC105014547 coding downstream 348046 83064063 ~ 83288949 (-)
LOC100136308 LOC106570939 coding downstream 674964 82873779 ~ 82962031 (-)
LOC118937425 NA coding downstream 763271 82872722 ~ 82873724 (-)
LOC118937424 NA coding downstream 765975 82868101 ~ 82871020 (-)
LOC118937426 LOC100380868 coding upstream 50278 83692703 ~ 83698034 (-)
ypel1 ypel1 coding upstream 231532 83873900 ~ 83903039 (-)
LOC110536511 NA coding upstream 270411 83914813 ~ 83921303 (-)
LOC110535142 mapk1 coding upstream 278206 83922608 ~ 83982640 (-)
grsf1 grsf1 coding upstream 401110 84045512 ~ 84084200 (-)
G1025521 NA non-coding downstream 4708 83631312 ~ 83632287 (-)
G1025467 NA non-coding downstream 10205 83544297 ~ 83626790 (-)
G1025482 NA non-coding downstream 70941 83565594 ~ 83566054 (-)
G1025477 NA non-coding downstream 79864 83555521 ~ 83557131 (-)
G1025465 NA non-coding downstream 94439 83540642 ~ 83542556 (-)
G1025497 LOC100380868 non-coding upstream 21943 83666345 ~ 83668159 (-)
G1025514 NA non-coding upstream 23854 83668256 ~ 83668994 (-)
G1025498 NA non-coding upstream 38863 83683265 ~ 83718776 (-)
G1025557 NA non-coding upstream 78224 83722626 ~ 83722852 (-)
G1025481 NA other downstream 71421 83562302 ~ 83565574 (-)
LOC110536484 LOC106570928 other downstream 1378030 82257489 ~ 82522382 (-)
G1023858 NA other downstream 1722628 81912957 ~ 81914367 (-)
G1023618 NA other downstream 2019766 81615253 ~ 81617939 (-)
G1026586 NA other upstream 1542924 85187326 ~ 85197500 (-)
G1026978 NA other upstream 1968950 85613352 ~ 85614375 (-)

Expression


Co-expression Network