G1026794


Basic Information

Item Value
gene id G1026794
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048575.1
NCBI id CM023229.2
chromosome length 86280908
location 85409957 ~ 85429505 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1168723
gccaggttctgctgtggtgcagtggttgcacagcctttcctctacagggagccaggttctgctgtggtgcagtggttgcacagcctttcctctacagggagccaggttctgcagtggttgtacagcctttcctctacagggatccaggttctgctgtggtgcagtggctgcacagcctttcctctacagggagccaggttctgcagtggttgtacagcctttcctctacagggatccaggttctgctgtggtgcagtggttgcacagcctttcctctacagggagacaggtttTCCTCAGGTGTCTACAgatgtctacccttctcaatggcaaggcagtggtcactgagcctgtactttgtcaaggtttttctaaggttttgatcagtaaccatggtcaaatagttggcaacagtgtactgtcgatttagggccagatagcactgcattttgctttgtgtttgtgcttcccaataagcaatgtagttttgttttgattgtgttataatttggtttattctgattgattggatgttctgatCAGGaagcttcagtgtgttagtagaacaggttagtgaactcagccccaggaccagctggatgaggggactgaggcttcagtgtgttagtgaactcaggaccagctggatgaggggactattttctttgctcagctcttggcattgcagggcttggtaattaTATGAGaggggggtcactgtattttagatgtttccaaaacttaaaatgctctttttttagtttttattattaaatggatattggcctaattctgccctgcatgcattgattgtagttttcctctggacatgtaggagaatcatacagaactctgcatgcagcgtttcaatggggtgtttgtcccatttgaggaaatcttgttttgcaagtggaccccacacctcgctgccataaagtgcaattggttcaatgacaggCAATTCGTTTCAGCCAAATTTGAATAgctatttcaatttgaatttgaATGGCGTAAGTTTCCCTGCGGTCTGTCTCTCATTCAActgattccgttccagccattccCGCGAGCCCGTCCTCACCAACAAGTTCCTTACGTGGATATGGTGCATCTGAAACTTCATTCTGTGTGTAAATTGTCTCTCcaatgagagagcgagacagacaagTCCTATTTTGTTGAAGGCATGCCTGCTAAGTGTGATGATAATTACTTACAGGTTGGCGATGCCAGCTTTCCTCACCGCGGTGGAGATGGCTTTGACGGCCGTGCACATCGAGTTGAGCAGGGTAGTGAGCTCCCCTGTCCCCTTCGctttcctcccttcctccagCACAAACCGGGTTAAAGTCACCACGTTGGTATCAAAAGAGCCTCGGTCAGACATGACTGCAAAGATCGTAGAGCGGCG
>TU1168722
GTTTGGTACAGCACCACCAAGGTTTATTATTCACATGCTTCATCATCCCAAACAATATCTGTGTCAAGGCACATATCTTATATACTGCATAGAGGTAACATTAGGTCTGTCATTTAGTAGTACTGATAAATAGTTCACACACTGGTTCCCCATAGTGGTCTGAGAAGGTACTGCAAATTCCTTGAAAATAAATGACAATGAAGGAATAAGGGGAAAATGGTCTCTTCCCCTTCAGTTCCTGGTCCAGGATGGGAAGTAGTTGGTGGCTATCTTGGTTTACTTATTCTTTGGTCTGGGTGGTGAGGCATGAGGGTGTATCTTTGGTCTAGTCTAGTGGTTGATGGAGTGTTGGTGTATCGTTGGTCACTTGGTCAACAGCATGCTGATCCCGTTGAGTCTTATAAGTGATAGAGAATCTTTGGTCTCTTGGTTTATAATGGGTCTTTACATAGGGAGTGTGTACCTGCTTGGTCCCTAGTTACTAGGACCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGGCCTGGTGTTTTTGGTATATATCCAGGTACTCCTGGACGTCACTAGGTGACCCCAGCACCACGGGAACTCTCTGGTGGATGTTGATTGGCTGAATGTCCAGGACGTTCTGACTTCCTGTGGTTGCCATACCGCCCGCCTGCTCGATGATGAACGCCATGGGGTTGCACTCATACAGCAGACGCAgctagaacacagagaacactTAATATTACAGAatatcttcctaatattgagttcaccccctttttccctcagaacagcctcaattcatcaaggtccccaaagcgcacacatccctgggtcgctcgtcttttcaattcgctgcagctagcgactggaacgagctgcaacaaacactcaaactggacagttttatctcaatctcttcattcagagactcaaatcatggacactcttactgacagttgtcaattttgtcaacgggacaacagtaacaacaataaccaagggtaaAAATAACCAGatattcaacaataacaataagcatacagtagaggacatgtgcaggttgattggtctgtcagacactgtccctcatcttatggcaggcagcaatgtagtgcgctgccaacccacagctctctgcgtcctcccccaacaggacgggagcctactctcatcagagaggtctttgaaaccgtGAATAAGGGATTAAAATTTGGGGAAAAGACAATAATTGTTCTatattttttgacattttgtcaggaaatgcagctccgtctcaggttctgctgttgtgcagtggttgcacagcctttcctctacagggagccaggttctgctgtggtgcagtggttgcacagcctttcctctacagggagccaggttctgctgtggtgcagtggttgcacagc
>TU1168725
GTTTGGTACAGCACCACCAAGGTTTATTATTCACATGCTTCATCATCCCAAACAATATCTGTGTCAAGGCACATATCTTATATACTGCATAGAGGTAACATTAGGTCTGTCATTTAGTAGTACTGATAAATAGTTCACACACTGGTTCCCCATAGTGGTCTGAGAAGGTACTGCAAATTCCTTGAAAATAAATGACAATGAAGGAATAAGGGGAAAATGGTCTCTTCCCCTTCAGTTCCTGGTCCAGGATGGGAAGTAGTTGGTGGCTATCTTGGTTTACTTATTCTTTGGTCTGGGTGGTGAGGCATGAGGGTGTATCTTTGGTCTAGTCTAGTGGTTGATGGAGTGTTGGTGTATCGTTGGTCACTTGGTCAACAGCATGCTGATCCCGTTGAGTCTTATAAGTGATAGAGAATCTTTGGTCTCTTGGTTTATAATGGGTCTTTACATAGGGAGTGTGTACCTGCTTGGTCCCTAGTTACTAGGACCCTAGTTACCATTGTTGGCCTGGTGTGTGCGGTCCCTAGTTACCATTGTTGTTAGACAGGAtgtccagcttcttcacctggtCCCCCGTCACATTGGTGCTGCCCGCTATGCCATACCTGGGAAGACGAGAGGAGACGCAATTAGTACCCACTACCCATCTCATTGGTGCTGCCCGCTGTGCCATACCTGTCAACCAGGGGAGAGACAGAACCGCTACCCCCTAACCACCGCTgcctcctaaccaccgctacctcctaaccaccgctacctcctaaccaccgctacctcctaaccac

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1168723 False 1411 lncRNA 0.47 2 85409957 85411459
TU1168722 False 1551 lncRNA 0.47 2 85411726 85429505
TU1168725 True 785 lncRNA 0.48 3 85419671 85429505

Neighbor

gene id symbol gene type direction distance location
kank1a kank1 coding downstream 17955 85239609 ~ 85392002 (-)
LOC118937429 dmrt3 coding downstream 287585 85046114 ~ 85122372 (-)
dmrt2a LOC106570979 coding downstream 444190 84961291 ~ 84965767 (-)
smarca2 NA coding downstream 690151 84501885 ~ 84719806 (-)
adamts3 LOC107719190 coding downstream 983805 84235293 ~ 84426152 (-)
dapk1 dapk1 coding upstream 22680 85452185 ~ 85658741 (-)
LOC118937430 NA coding upstream 91074 85520579 ~ 85522516 (-)
tmem8b tmem8b coding upstream 612237 86041742 ~ 86232638 (-)
G1026793 NA non-coding downstream 652 85409046 ~ 85409305 (-)
G1026789 NA non-coding downstream 4141 85405599 ~ 85405816 (-)
G1026787 NA non-coding downstream 6952 85402774 ~ 85403005 (-)
G1026772 NA non-coding downstream 67429 85342257 ~ 85342528 (-)
G1026771 NA non-coding downstream 67907 85341067 ~ 85342050 (-)
G1026935 NA non-coding upstream 6506 85436011 ~ 85436478 (-)
G1026937 NA non-coding upstream 15390 85444895 ~ 85445283 (-)
G1026931 NA non-coding upstream 18277 85447782 ~ 85451386 (-)
G1026938 NA non-coding upstream 24254 85453759 ~ 85455836 (-)
G1026948 NA non-coding upstream 99646 85529151 ~ 85532743 (-)
G1026586 NA other downstream 212457 85187326 ~ 85197500 (-)
ypel1 ypel1 other downstream 1506918 83873900 ~ 83903039 (-)
G1025498 NA other downstream 1691349 83683265 ~ 83718776 (-)
G1025467 NA other downstream 1783167 83544297 ~ 83626790 (-)
G1025481 NA other downstream 1844383 83562302 ~ 83565574 (-)
G1026978 NA other upstream 183847 85613352 ~ 85614375 (-)

Expression


Co-expression Network