Item | Value |
---|---|
gene id | LOC110517257 |
gene name | tcf4 |
gene type | misc |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048576.1 |
NCBI id | CM023230.2 |
chromosome length | 102853256 |
location | 1152988 ~ 1562821 (+) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
symbol | description |
---|---|
tcf4 | Predicted to enable protein dimerization activity. Acts upstream of or within brain development and lens development in camera-type eye. Is expressed in several structures, including brain; digestive system; notochord; pectoral fin bud; and retina. Used to study Pitt-Hopkins syndrome. Human ortholog(s) of this gene implicated in Fuchs' endothelial dystrophy and Pitt-Hopkins syndrome. Orthologous to human TCF4 (transcription factor 4). |
description |
---|
PREDICTED: transcription factor 4 isoform X4 |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_036936725.1 | False | 1945 | mRNA | 0.54 | 16 | 1152988 | 1562818 |
XM_036936726.1 | False | 1945 | mRNA | 0.54 | 15 | 1154483 | 1562821 |
XM_036936724.1 | False | 2030 | mRNA | 0.53 | 15 | 1154485 | 1562821 |
XM_036936723.1 | False | 2026 | mRNA | 0.54 | 15 | 1154490 | 1562819 |
TU1170735 | False | 947 | TUCP | 0.59 | 8 | 1476711 | 1562699 |
TU1170736 | True | 927 | TUCP | 0.61 | 7 | 1546625 | 1562699 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
LOC110536893 | txnl1 | coding | upstream | 207802 | 917211 ~ 945186 (+) |
katnal2 | katnal2 | coding | upstream | 792537 | 339376 ~ 360451 (+) |
sigmar1 | sigmar1 | coding | upstream | 817392 | 324934 ~ 335596 (+) |
cntfr | cntfr | coding | downstream | 969763 | 2532584 ~ 3047731 (+) |
LOC118937614 | NA | coding | downstream | 1124007 | 2686828 ~ 2716994 (+) |
il11ra | LOC106568611 | coding | downstream | 1532713 | 3095534 ~ 3206784 (+) |
LOC118937617 | NA | coding | downstream | 2058575 | 3621059 ~ 3622127 (+) |
LOC110536763 | LOC106572512 | coding | downstream | 2573499 | 4136320 ~ 4226240 (+) |
G1028356 | NA | non-coding | upstream | 52198 | 1100184 ~ 1100790 (+) |
G1028341 | NA | non-coding | upstream | 53146 | 1037232 ~ 1099842 (+) |
G1028332 | NA | non-coding | upstream | 143092 | 1009470 ~ 1009896 (+) |
G1028330 | NA | non-coding | upstream | 150775 | 1002014 ~ 1002213 (+) |
G1028322 | NA | non-coding | upstream | 157335 | 995409 ~ 995653 (+) |
G1028551 | NA | non-coding | downstream | 1957 | 1564778 ~ 1587497 (+) |
G1028552 | NA | non-coding | downstream | 2308 | 1565129 ~ 1602417 (+) |
G1028553 | NA | non-coding | downstream | 3217 | 1566038 ~ 1605878 (+) |
G1028556 | NA | non-coding | downstream | 31131 | 1593952 ~ 1602545 (+) |
G1028554 | NA | non-coding | downstream | 38137 | 1600958 ~ 1602872 (+) |
G1028361 | NA | other | upstream | 45262 | 1107151 ~ 1107726 (+) |
G1028327 | NA | other | upstream | 154352 | 998270 ~ 998636 (+) |
G1028240 | LOC106568532 | other | upstream | 259226 | 881163 ~ 893762 (+) |
G1028184 | NA | other | upstream | 372128 | 758922 ~ 780860 (+) |
G1028162 | NA | other | upstream | 419534 | 733136 ~ 733454 (+) |
G1028573 | NA | other | downstream | 149710 | 1712531 ~ 1714574 (+) |
G1029035 | NA | other | downstream | 324326 | 1887147 ~ 1887594 (+) |
G1029386 | NA | other | downstream | 880710 | 2443531 ~ 2444497 (+) |
G1029570 | NA | other | downstream | 1107083 | 2669904 ~ 2670507 (+) |
G1029628 | NA | other | downstream | 1240668 | 2803489 ~ 2804024 (+) |
G1028517 | NA | non-coding | upstream | 2690 | 1473553 ~ 1474021 (+) |
G1028494 | NA | non-coding | upstream | 54923 | 1420694 ~ 1421788 (+) |
G1028480 | NA | non-coding | upstream | 96516 | 1378271 ~ 1380195 (+) |
G1028467 | NA | non-coding | upstream | 136748 | 1318900 ~ 1339963 (+) |
G1028466 | NA | non-coding | upstream | 153321 | 1317341 ~ 1323390 (+) |
G1028515 | NA | other | upstream | 6016 | 1469850 ~ 1470695 (+) |
G1028513 | NA | other | upstream | 6935 | 1468575 ~ 1469776 (+) |
G1028508 | NA | other | upstream | 16808 | 1459347 ~ 1459903 (+) |
G1028459 | NA | other | upstream | 123114 | 1304335 ~ 1353597 (+) |
G1028416 | NA | other | upstream | 251313 | 1224701 ~ 1225398 (+) |
species | gene id | symbol | gene type | chromosome | NCBI id | location |
---|---|---|---|---|---|---|
grasscarp (Ctenopharyngodon idella) | CI01025545_00000594_00001044 | TCF4 | coding | CI01025545 | null | 594 ~ 1044 (+) |