Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523118 |
| gene name | LOC106572051 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 7645369 ~ 7821518 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| protein Shroom3-like, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936805.1 | False | 7563 | mRNA | 0.60 | 14 | 7647555 | 7744050 |
| XM_036936804.1 | False | 8066 | mRNA | 0.59 | 15 | 7647555 | 7782275 |
| XM_036936802.1 | False | 8171 | mRNA | 0.59 | 16 | 7647555 | 7821512 |
| XM_036936803.1 | False | 7589 | mRNA | 0.61 | 17 | 7647555 | 7821518 |
| TU1178469 | False | 424 | lncRNA | 0.42 | 2 | 7645369 | 7645820 |
| TU1178493 | False | 1199 | lncRNA | 0.37 | 2 | 7645974 | 7647206 |
| TU1178488 | False | 894 | lncRNA | 0.38 | 2 | 7646279 | 7647206 |
| TU1178484 | True | 1258 | TUCP | 0.52 | 5 | 7721252 | 7782038 |
7,500,000
7,520,000
7,540,000
7,560,000
7,580,000
7,600,000
7,620,000
7,640,000
7,660,000
7,680,000
7,700,000
7,720,000
7,740,000
7,760,000
7,780,000
7,800,000
7,820,000
7,840,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536901 | LOC106568527 | coding | downstream | 34220 | 7606957 ~ 7613335 (-) |
| atp8b1 | LOC106568528 | coding | downstream | 61029 | 7511022 ~ 7586526 (-) |
| LOC110536886 | tcf4 | coding | downstream | 231739 | 7403125 ~ 7415816 (-) |
| LOC110536888 | LOC106568538 | coding | downstream | 270622 | 7311685 ~ 7376933 (-) |
| LOC110536889 | NA | coding | downstream | 339059 | 7307620 ~ 7309017 (-) |
| stbd1 | stbd1 | coding | upstream | 16089 | 7837607 ~ 7851608 (-) |
| LOC101268972 | LOC101448022 | coding | upstream | 78108 | 7898867 ~ 7900915 (-) |
| LOC110536909 | LOC106568505 | coding | upstream | 157325 | 7978843 ~ 7981203 (-) |
| LOC110536914 | LOC106568507 | coding | upstream | 306330 | 8127848 ~ 8205393 (-) |
| LOC100136343 | LOC100136343 | coding | upstream | 424492 | 8246010 ~ 8252914 (-) |
| LOC110523118 | LOC106572051 | non-coding | downstream | 349 | 7645369 ~ 7821518 (-) |
| G1034387 | NA | non-coding | downstream | 3614 | 7643456 ~ 7643941 (-) |
| G1034385 | NA | non-coding | downstream | 4558 | 7641725 ~ 7642997 (-) |
| G1034350 | LOC106568525 | non-coding | downstream | 9522 | 7625844 ~ 7638033 (-) |
| G1034384 | NA | non-coding | downstream | 12143 | 7633706 ~ 7635412 (-) |
| G1034470 | NA | non-coding | upstream | 1705 | 7823223 ~ 7823774 (-) |
| G1034442 | NA | non-coding | upstream | 4515 | 7826033 ~ 7827382 (-) |
| G1034473 | NA | non-coding | upstream | 13624 | 7835142 ~ 7835362 (-) |
| G1034452 | NA | non-coding | upstream | 38549 | 7860067 ~ 7862363 (-) |
| G1032941 | NA | other | downstream | 1447221 | 6197017 ~ 6200334 (-) |
| G1032314 | NA | other | downstream | 1864191 | 5782940 ~ 5783364 (-) |
| LOC110536877 | mob3b | other | downstream | 2103047 | 5538381 ~ 5607736 (-) |
| G1032158 | NA | other | downstream | 2109943 | 5535481 ~ 5537612 (-) |
| G1031871 | slc46a2 | other | downstream | 2816101 | 4830370 ~ 4831454 (-) |
| G1034443 | yo84 | other | upstream | 6362 | 7827880 ~ 7834578 (-) |
| G1034667 | NA | other | upstream | 457821 | 8279339 ~ 8279866 (-) |
| G1035160 | NA | other | upstream | 1014738 | 8836256 ~ 8838834 (-) |
| hcn1 | hcn1 | other | upstream | 1196989 | 9018507 ~ 9206417 (-) |
| G1035717 | NA | other | upstream | 1711982 | 9533500 ~ 9548135 (-) |
| G1034355 | NA | non-coding | downstream | 88563 | 7556367 ~ 7556806 (-) |
| G1034391 | NA | non-coding | upstream | 13051 | 7660257 ~ 7662222 (-) |
| G1034393 | NA | non-coding | upstream | 22509 | 7669715 ~ 7680215 (-) |
| G1034395 | NA | non-coding | upstream | 26415 | 7673621 ~ 7677396 (-) |
| G1034399 | NA | non-coding | upstream | 49930 | 7697136 ~ 7698900 (-) |
| G1034404 | NA | non-coding | upstream | 56972 | 7704178 ~ 7704738 (-) |
| G1034406 | NA | non-coding | downstream | 10034 | 7709063 ~ 7711218 (-) |
| G1034446 | NA | non-coding | upstream | 14938 | 7796976 ~ 7825696 (-) |
| G1034449 | NA | non-coding | upstream | 25405 | 7807443 ~ 7808218 (-) |
