stbd1 (stbd1)


Basic Information

Item Value
gene id stbd1
gene name stbd1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 7837607 ~ 7851608 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622580.2
CAATAAGAGGTCATTTGGAACGCGCGTGGAGAAGAACACACACGCGTGTTTATATGCGAGCACGTTGCTTGTACCTGGCTCTCTCCTATCGATGACCGAAGCTTCAGAAATGACTATCAAGAAAAGTAAAACCGTCGCGTTTGAAAACCGTGCTGGGGATTTAACTGCGTTGTATTGTATGAGTGATTGGATGATTGCAGTGGTTCTCGCTATTATTGCCATGATGTCTGTATGGGCTGCACTGATCATATACAGATCTATACAGACACTGAAAGGTCCGAGAAGAAAGGTTGAAGATGAAACTGGAAAGGAGACTACAACCGAAGAAGCACTCCTCTCTTGTGTCGAGTCAACAGAGGAGACTGAGGTGATTCCAGAGGCACTGGCGAGctgggatggagagggatggaagagggagCCCGTGGTACGGATTCCAACAATCGATGAGGATGTAGAACCCATTGAGGGTATCCCAACAACCGATGAGGATCTACAAACCATTAGACGGAGAAGAACGACCAAGAAGAGCGACGGTCCTTATGCTGAGTTTCACCTCTGCTCTCCACCTGAAGAGCACAGAGGCTTATGTCATTATGAAGGCCTATGTCAGATCTGTGGAGGCTTGTGTCAGGATGACACACGGTCTCGGACTGACAATACCCTGGATGAGGAGGAACAGGCTACCAGTCACCATTCCCTCAGTGACATAAACAGTCAATCTGGACAGATGAAGGCTACAGACTTGTATAACCCGGAAGAGGAGGGTTTGAAGGAAGTTGAACTGAGGAATGATTGTCAGCGCACCGAGGAGTCTGTGGCTAGCCATCCACTTACCTTTGCCAACAACCCTCAGGAAGCTCCACAAGTCAATGAAACTCTCCCTGACATGTTGACTGACTCTGGTCTACAAGAACCTGACCAACTGTCTGTTACGGTGATCCAGGAAGGAAAATGCCCAGGCGCTGTTGTGATGACCAGCCATGTGGAGGTCTATGAGAAGTCTAGAACCATGGAGGATGACATGGAAGCGATGGTTGAGGATCTCTACAGTCACTTCCCGCAAGTGGACGATCGTTCAGCAGGTTTCGAATATTGTGAAGTGGCAAATGCATGGGTAGCGAAAAGAGACGATCTCAATGACCGTGGAAACGCTCGACAACCGGCTCAAAGCTGGAATACAACAGGGATTGACCCTACAGCGAGCATGACTAGCAACCCCCAGGAACTGTTTGACCAACAGCCAGACAGTCTCTGCACTGATCCCAACAGAGACGGTGTTCTTCATGACACCGCGATGGAAGGGTTAAGCAGGGAGCCTACGGAAGCTCGCGACACCCATGTGATTTCCGAGCGGAAGGGAGAGGGGGTTGATAAGAGCATGGACACACGGGTAGAGAGCAGTTGTCAGGAAGTTGAAATAAACATCATGGAAGCCACTATGGACTACAATGAATGGATGACGGTAAGTGTCACAGATGCAGAGGGTAACGCTGACACTCCCTGGGTGAGGATAAGCCACTCGTCCGACTGCTCTGCCGAGGCGGAGCATCAGCCCACAGAAACGCAGCACAATGCAGACGATTCAACAATCACTGAAACGCCCACATCAAAGGTCAAAGAAGCTGAAACCACACCTGTAACACAAGATGGAGACCTGCAGGAGAATAAAATGGCAGCTGTGCTTCCTAACGAACCACATGCAGTACAGGTGAGGTTCTGTATCCACTATCACACCCTGTCTCCCCGGCAGGAACTGGCTGTGACTGGGAACCAACCGGAGCTGGGGAGCTGGAAGGGCTTTGTTCCGCTGGAGAGGGGCCAGGACGGGTTCTGGGCCAGCTGGGTCGCCCTCCCTGCGGAGAAACTGGTGGAGTGGAAGTTCGTTCTGGTGGAGAATGGAGAAATCCAACGCTGGGAGGAGAGCGAGAATAGGCACCTGGAAACGGGTCGTGGCGGTGGAGTGGTGAACCTCAACAGGTGGTGGGGCTTCCTCTGAGTGAGCAACCAGTGGGAGGAGGAGTGGATGGCACTAGGTGGTCATTCTCTTAAGTAGCATTCTAAGAAGTGTTATAAGAATAGATTACTAGTGGTGTTAGTGTGTGGCTCTTGCATAGGAAGAGGACTGACTGGCGCAAGGGGTTGATGATAGAGGACTTGGTTGCGTCCCAATTTCTTACCCTTCACCCTGTGCActaattcacttttttttttttttttcctctttGCATTTTAAAAAGCCGTTTCCAATATTCTATACCCTGATCCTTTTCTTTTTACAGGGAAGTAATTGAGTACACTTTGGGTAAAGTATCTAATCAGGGCTCTAGTCCTTTTATGTACTGCATTATAGCAACACAACTATTAATCAAGTGGACACGTCTTAAGTCAATGACGTAATGCAAAGGTAAGAGTTGGATGAATGTCAATTTAGTGTGGCGCTTGGATATTGTCCAATTataggatgatgatgatgattcacTACTTTGACTAGAGCAGCTCTGTACTACGTTGGGCTTTGACACCAGCATTATTTGTGCTCTGGCAGTATAGCAATAATCACTGCAATAAGTGTTATCCAAgtattttttacatgttttactGCAGTTACTCAGGCTGTCTTTTTGTGATTCGTGAAATGGGCTGTTTATATTTATCAGAAATAGAAGTGTACTCGTAACCCGTCAACCGATATATAGGTCAGTGAATTGTTATTATGCAAATACTGTGATGCTGGAATTTTAAATGTCATATCTCTACATCAGATCTTAGCTTTCTTGAATTATATTTGTATATAGCTTCACCAGGTCCCTTAACCCTTTTTGATAATACATTTATCAGCGTTCCTGGAGGTTTTTGACATGTTTACTCACTTTGGTTTGGTTCACTTAGATTTTATTTTAGCACAATTGATGGTGTCTTGGTTCTAAtcttttaataataataaaatgtctTATGATTGCAATGTGGTTAATGTACTACTGTTATATATTTAGCTTAAGTAGTGTTCTGTCCTATTACCCAATAAACAAACATATTTTCCTGGAATGCA

Function

symbol description
stbd1 Predicted to enable glycogen binding activity and starch binding activity. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human STBD1 (starch binding domain 1).

NR:

description
starch-binding domain-containing protein 1

GO: NA

KEGG:

id description
K22267 STBD1; starch-binding domain-containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622580.2 True 3049 mRNA 0.46 2 7837607 7851608
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110523118 LOC106572051 coding downstream 16089 7645369 ~ 7821518 (-)
LOC110536901 LOC106568527 coding downstream 224272 7606957 ~ 7613335 (-)
atp8b1 LOC106568528 coding downstream 251081 7511022 ~ 7586526 (-)
LOC110536886 tcf4 coding downstream 421791 7403125 ~ 7415816 (-)
LOC110536888 LOC106568538 coding downstream 460674 7311685 ~ 7376933 (-)
LOC101268972 LOC101448022 coding upstream 48018 7898867 ~ 7900915 (-)
LOC110536909 LOC106568505 coding upstream 127235 7978843 ~ 7981203 (-)
LOC110536914 LOC106568507 coding upstream 276240 8127848 ~ 8205393 (-)
LOC100136343 LOC100136343 coding upstream 394402 8246010 ~ 8252914 (-)
LOC118937621 NA coding upstream 426933 8278541 ~ 8288538 (-)
G1034473 NA non-coding downstream 2245 7835142 ~ 7835362 (-)
G1034442 NA non-coding downstream 10225 7826033 ~ 7827382 (-)
G1034446 NA non-coding downstream 11911 7796976 ~ 7825696 (-)
G1034470 NA non-coding downstream 13833 7823223 ~ 7823774 (-)
G1034449 NA non-coding downstream 29389 7807443 ~ 7808218 (-)
G1034452 NA non-coding upstream 8459 7860067 ~ 7862363 (-)
G1034499 NA non-coding upstream 49411 7901019 ~ 7901231 (-)
G1034504 NA non-coding upstream 57214 7908822 ~ 7909153 (-)
G1034505 NA non-coding upstream 58136 7909744 ~ 7910070 (-)
G1034443 yo84 other downstream 3029 7827880 ~ 7834578 (-)
G1032941 NA other downstream 1637273 6197017 ~ 6200334 (-)
G1032314 NA other downstream 2054243 5782940 ~ 5783364 (-)
LOC110536877 mob3b other downstream 2293099 5538381 ~ 5607736 (-)
G1034667 NA other upstream 427731 8279339 ~ 8279866 (-)
G1035160 NA other upstream 984648 8836256 ~ 8838834 (-)
hcn1 hcn1 other upstream 1166899 9018507 ~ 9206417 (-)
G1035717 NA other upstream 1681892 9533500 ~ 9548135 (-)
LOC110536932 NA other upstream 1834421 9684834 ~ 9696461 (-)

Expression

stbd1(stbd1) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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stbd1(stbd1) Expression in each Bioproject

Bar chart with 19 bars.
stbd1(stbd1) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
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Co-expression Network