LOC101268972 (LOC101448022)


Basic Information

Item Value
gene id LOC101268972
gene name LOC101448022
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 7898867 ~ 7900915 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622583.2
TAATAAAAGTGGCCGGTCGAAGCTCCTCTAGTCTCATTTACACAGAATTCAGGAGTCTAGTCTCTGCTCTCTTCAACATGAGGACAGCACAGTACATTGCCCTCTTCATGTTCCTGACTCTGCTCTGCCCAATCCAGGTGCAGACCGCTCCTGTGCCTGAGGATTGGACGGGCCTGATCACCCGAGCCAAGCGCTCTCTCCTTTGGCGATGGAATACTCTGAAGCCCGTTGGCACAAGCTGCAGAGAGCACGACGAGTGCGGGACCAAATACTGCAGGAAAAAGATCTGTTCGTTCCAGGTTTTTATATCTTGAACTGAAATATATAACTCTGGACACGGCCAGAACAACAATCAATGGAGAAGCAACAATCAATGGAGCCTGTCAATGGAATGCCTAACTGTACAAACTGATGACACAGGATTTGAATTGGCTCGCCAAATATTTGGTAAAAACAGCTAACCAACTCATTTGAACAGCTCGATAATCACTTCCtaactgataaaaaaaaaatatatatatatgtaccagGTACAGTCTAACAGTAAGTAAGCTGTAAATGTTGTAAAGTTACATGAACCCTGTGTCAGTATGTCCAATCAGATAATAGCATTCCCATTGGAGATACTTCATCTATCCAAtcaacaaaatgttttaaaacaaaaTACAGAAAATGCACTCAAACCAACATGAAGCAGTTTATTGACAAGAAATAATAATGTCTGTGGAAGATACGTTCAAAACTG
>TU1178596
CAGAATTCAGGAGTCTAGTCTCTGCTCTCTTCAACATGAGGACAGCACAGTACATTGCCCTCTTCATGTTCCTGACTCTGCTCTGCCCAATCCAGGTGCAGACCGCTCCTGTGCCTGAGGATTGGACGGGCCTGATCACCCGAGCCAAGCGCTCTCTCCTTTGGCGATGGAATACTCTGAAGCCCGTTGGCACAAGCTGCAGAGAGCACGACGAGTGCGGGACCAAATACTGCAGGAAAAAGATCTGTTCGTTCCAGGTTTTTATATCTTGAACTGAAATATATAACTCTGGACACGGCCAGAACAACAATCAATGGAGAAGCAACAATCAATGGAGCCTGTCAATGGAATGCCTAACTGTACAAACTGATGACACAGGATTTGAATTGGCTCGCCAAATATTTGGTAAAAACAGCTAACCAACTCATTTGAACAGCTCGATAATCACTTCCtaactgataaaaaaaaaatatatatatatgtaccagGTACAGTCTAACAGTAAGTAAGCTGTAAATGTTGTAAAGTTACATGAACCCTGTGTCAGTATGTCCAATCAGATAATAGCATTCCCATTGGAGATACTTCATCTATCCAAtcaacaaaatgttttaaaacaaaaTACAGAAAATGCACTCAAACCAACATGAAGCAGTTTATTGACAAGAAATAATAATGTCTGTGGAAGATACGTTCAAAACTGTGACGATGCCATGGAGCcattatttatttgtaaattatttattTGTAAATATTGTCAAgattgtacacacacaccacacacacacaatgtaaataATGTTAATATATATTATTGGAATTTTTTTGTGACATGGTAGTGGAAGTATTTTATTGTTtcttaaaacaacaacaaccaaaaaaGCCCAtgcaggttctctctctctctcatagagcAAAAATAATAACACACATGTCCAATAACAAGTATAACTCGTACTAGTTCAGATGAAGGACAGAAAAATGAATATGAAAAAAGTAGTCTGCATGCCAGTGATCGGAACGTAGAGTTGTGAACATTACTTGGACGCTccacagatggtcatactatcaacaaactaccTGTTGATATaccatctgttgataagcaactgcttgctaaagGTTATAACTGTTTGCTAAAGGTTataactgcttgctaaggttataACTGTTTGCTAAGGTTAGTGTTAACTAACTAGGTTTAGACTaagagtttagggttaggataaagtTTAGGGTTAGTAGATTGCTAGTTGAATGTTACCGATACTCTTTTATCACGCTAAAATAGACAAGTATACACATGCCTGTCCGTTGTGAAACTGGTTCATCACAAAAATAAAGAAATTGGAAACGACGTTTTAAAATGCAGATTTCCGGAAGCAGGAATATCAGTATATGACTTGCCACTTCTCTCAGTGATCACAAGCCCAGCCAGCAGA
>TU1178594
CAGAATTCAGGAGTCTAGTCTCTGCTCTCTTCAACATGAGGACAGCACAGTACATTGCCCTCTTCATGTTCCTGACTCTGCTCTGCCCAATCCAGGTGCAGACCGCTCCTGTGCCTGAGGATTGGACGGGCCTGATCACCCGAGCCAAGCGCTCTCTCCTTTGGCGATGGAATACTCTGAAGCCCGTTGGCACAAGCTGCAGAGAGCACGACGAGTGCGGGACCAAATACTGCAGGAAAAAGATCTGTTCGTTCCAGGTTTTTATATCTTGAACTGAAATATATAACTCTGGACACGGCCAGAACAACAATCAATGGAGAAGCAACAATCAATGGAGCCTGTCAATGGAATGCCTAACTGTACAAACTGATGACACAGGATTTGAATTGGCTCGCCAAATATTTGGTAAAAACAGCTAACCAACTCATTTGAACAGCTCGATAATCACTTCCtaactgataaaaaaaaaatatatatatatgtaccagGTACAGTCTAACAGTAAGTAAGCTGTAAATGTTGTAAAGTTACATGAACCCTGTGTCAGTATGTCCAATCAGATAATAGCATTCCCATTGGAGATACTTCATCTATCCAAtcaacaaaatgttttaaaacaaaaTACAGAAAATGCACTCAAACCAACATGAAGCAGTTTATTGACAAGAAATAATAATGTCTGTGGAAGATACGTTCAAAACTGTGACGATGCCATGGAGCcattatttatttgtaaattatttattTGTAAATATTGTCAAgattgtacacacacaccacacacacacaatgtaaataATGTTAATATATATTATTGGAATTTTTTTGTGACATGGTAGTGGAAGTATTTTATTGTTtcttaaaacaacaacaaccaaaaaaGCCCAtgcaggttctctctctctctcatagagcAAAAATAATAACACACATGTCCAATAACAAGTATAACTCGTACTAGTTCAGATGAAGGACAGAAAAATGAATATGAAAAAAGTAGTCTGCATGCCAGTGATCGGAACGTAGAGTTGTGAACATTACTTGGACGCTccacagatggtcatactatcaacaaactaccTGTTGATATaccatctgttgataagcaactgcttgctaaagGTTATAACTGCTTGCTAAAGGTTATAACTGTTTGCTAAAGGTTataactgcttgctaaggttataACTGTTTGCTAAGGTTAGTGTTAACTAACTAGGTTTAGACTaagagtttagggttaggataaagtTTAGGGTTAGTAGATTGCTAGTTGAATGTTACCGATACTCTTTTAT
>TU1178595
CAGAATTCAGGAGTCTAGTCTCTGCTCTCTTCAACATGAGGACAGCACAGTACATTGCCCTCTTCATGTTCCTGACTCTGCTCTGCCCAATCCAGGTGCAGACCGCTCCTGTGCCTGAGGATTGGACGGGCCTGATCACCCGAGCCAAGCGCTCTCTCCTTTGGCGATGGAATACTCTGAAGCCCGTTGGCACAAGCTGCAGAGAGCACGACGAGTGCGGGACCAAATACTGCAGGAAAAAGATCTGTTCGTTCCAGGTTTTTATATCTTGAACTGAAATATATAACTCTGGACACGGCCAGAACAACAATCAATGGAGAAGCAACAATCAATGGAGCCTGTCAATGGAATGCCTAACTGTACAAACTGATGACACAGGATTTGAATTGGCTCGCCAAATATTTGGTAAAAACAGCTAACCAACTCATTTGAACAGCTCGATAATCACTTCCtaactgataaaaaaaaaatatatatatatgtaccagGTACAGTCTAACAGTAAGTAAGCTGTAAATGTTGTAAAGTTACATGAACCCTGTGTCAGTATGTCCAATCAGATAATAGCATTCCCATTGGAGATACTTCATCTATCCAAtcaacaaaatgttttaaaacaaaaTACAGAAAATGCACTCAAACCAACATGAAGCAGTTTATTGACAAGAAATAATAATGTCTGTGGAAGATACGTTCAAAACTGTGACGATGCCATGGAGCcattatttatttgtaaattatttattTGTAAATATTGTCAAgattgtacacacacaccacacacacacaatgtaaataATGTTAATATATATTATTGGAATTTTTTTGTGACATGGTAGTGGAAGTATTTTATTGTTtcttaaaacaacaacaaccaaaaaaGCCCAtgcaggttctctctctctctcatagagcAAAAATAATAACACACATGTCCAATAACAAGTATAACTCGTACTAGTTCAGATGAAGGACAGAAAAATGAATATGAAAAAAGTAGTCTGCATGCCAGTGATCGGAACGTAGAGTTGTGAACATTACTTGGACGCTccacagatggtcatactatcaacaaactaccTGTTGATATaccatctgttgataagcaactgcttgctaaagGTTATAACTGCTTGCTAAAGgttataACTGTTTGCTAAGGTTAGTGTTAACTAACTAGGTTTAGACTaagagtttagggttaggataaagtTTAGGGTTAGTAGATTGCTAGTTGAATGTTACCGATACTCTTTTAT

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0042742 defense response to bacterium biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622583.2 False 745 mRNA 0.42 3 7899626 7900915
TU1178596 False 1442 lncRNA 0.38 4 7898867 7900873
TU1178594 False 1298 lncRNA 0.38 3 7899031 7900873
TU1178595 True 1259 lncRNA 0.38 4 7899031 7900873
Loading

Neighbor

gene id symbol gene type direction distance location
stbd1 stbd1 coding downstream 48018 7837607 ~ 7851608 (-)
LOC110523118 LOC106572051 coding downstream 78108 7645369 ~ 7821518 (-)
LOC110536901 LOC106568527 coding downstream 286291 7606957 ~ 7613335 (-)
atp8b1 LOC106568528 coding downstream 313100 7511022 ~ 7586526 (-)
LOC110536886 tcf4 coding downstream 483810 7403125 ~ 7415816 (-)
LOC110536909 LOC106568505 coding upstream 77928 7978843 ~ 7981203 (-)
LOC110536914 LOC106568507 coding upstream 226933 8127848 ~ 8205393 (-)
LOC100136343 LOC100136343 coding upstream 345095 8246010 ~ 8252914 (-)
LOC118937621 NA coding upstream 377626 8278541 ~ 8288538 (-)
ptpn13 ptpn13 coding upstream 390636 8291551 ~ 8460671 (-)
G1034452 NA non-coding downstream 37263 7860067 ~ 7862363 (-)
G1034473 NA non-coding downstream 64264 7835142 ~ 7835362 (-)
G1034442 NA non-coding downstream 72244 7826033 ~ 7827382 (-)
G1034446 NA non-coding downstream 73930 7796976 ~ 7825696 (-)
G1034499 NA non-coding upstream 104 7901019 ~ 7901231 (-)
G1034504 NA non-coding upstream 7907 7908822 ~ 7909153 (-)
G1034505 NA non-coding upstream 8829 7909744 ~ 7910070 (-)
G1034507 NA non-coding upstream 9846 7910761 ~ 7911158 (-)
G1034524 NA non-coding upstream 37851 7938766 ~ 7939543 (-)
G1034443 yo84 other downstream 65048 7827880 ~ 7834578 (-)
G1032941 NA other downstream 1699292 6197017 ~ 6200334 (-)
G1032314 NA other downstream 2116262 5782940 ~ 5783364 (-)
LOC110536877 mob3b other downstream 2355118 5538381 ~ 5607736 (-)
G1034667 NA other upstream 378424 8279339 ~ 8279866 (-)
G1035160 NA other upstream 935341 8836256 ~ 8838834 (-)
hcn1 hcn1 other upstream 1117592 9018507 ~ 9206417 (-)
G1035717 NA other upstream 1632585 9533500 ~ 9548135 (-)
LOC110536932 NA other upstream 1785114 9684834 ~ 9696461 (-)

Expression

LOC101268972(LOC101448022) Expression in all Baseline Samples

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LOC101268972(LOC101448022) Expression in each Bioproject

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LOC101268972(LOC101448022) Expression in each Sample
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Co-expression Network