LOC110536909 (LOC106568505)


Basic Information

Item Value
gene id LOC110536909
gene name LOC106568505
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 7978843 ~ 7981203 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622585.2
GTGTTCAAAGGTGAGTGTGTCGGTTAAGTTGATGTGGAAAATGTAGGTAGACCCTCTTTGGACTTACATTAACTATGTGTGAAACTGTTTAACAGCTTTAATTAACTCCTCAAAAAAGACACCTAGCCCAGGACTGCAAAGAAAATGAGGGAGTGCATTTCTGTCCACATCGGCCAAGCAGGAGTCCAGATGGGCAATGCATGCTGGGAGTTGTATTGTCTGGAGCATGGCTTCCAGCCAGATGGGACCATCCATGCGAACACTGCTCCTCAATTGACTGACTCATCGTTTGGCACCTTCTTCAGTGAGACTGGGGCTGGGAAATATGTTCCCAGGGCCATCTTCTTAGATCTGGAGCCTACTGTTGTGGATGAGATCAGGAATGGCCACTACCGCCAGCTGTATCACCCTGAACAACTCATCAGTGGCAAGGAAGACGCTGCCAATAACTACGCTCGTGGCCATTACACCATCGGCAAGGAGATCGTGGACTCTGTCATGGACAGGATGCGCAAAATGGCTGACCAATGCACTGGACTACAAGGGTTCCTCATCTTCCATAGTTTTGGAGGAGGGACCGGCTCTGGTTTTGGGGCCCTGTTGATGGAATGCCTGTCTGTGGATTACGGCAAGAAGTCCAAACTAGAATTCTCAGTCTACCCTGCTCCCCAGGTGTCCACAGCAGTGGTGGAGCCCTACAACTCCATCCTGACCACCCACACCACCCTGGAGCACTCGGACTGCTCTTTCATGGTGGACAACGAGGCCATCTTTGACATCTGCAAGCGTAACCTGGGAGTGGAGCGGCCATCTTACACCAACCTGAACCGCCTCATCGCCCAGATTGTCTCCTCCATCACAGCCTCCCTGCGCTTCGATGGAGCTCTCAACGTAGAcctgacagagttccagaccaACCTTGTGCCTTACCCCCGTATCCACTTTCCCCTGGTCACCTATGCCCCCATCATCTCAGCAGAAAAGGCCTACCACGAGCAGCTCTCTGTCCCCGAGATCACCAACGCCTGCTTTGAGCCGGCtaaccagatggtgaagtgtgatccCAGACGCGGCAAGTACATGGCCTGCTGCTTGCTGTACCGCGGCGACGTGGTTCCCAAAGATGTCAACGCAGCCATCGCCAGCATCAAGACCCGGCGCAGCATCCAGTTTGTAGATTGGTGCCCCACTGGGTTCAAGGTGGGGATCAACTACCAACCCCCTACGGCGGTTCCTGGAGGAGACCAGGCCAAGGTCCAGAGGGCTGTGTGTATGCTGAGTAACACCACAGCCATCGCCGAGGCTTGGAGTCGTCTGGACCACAAGTTTGACCTGATGTATGCCAAGAGAGCCTTCGTGCACTGGTACGTGGGTGAGGGCATGGAGGAGGGAGAGTTCTCTGAGGCCAGAGAAGACATGGCTGCTCTGGAGAAGGACTATGAGGAGGTGGGGGCAGACTCTGGGGATGCctgtgaggatgaggaggatgaatACTAAATCCTGTTTGACAGTCTGTTTTGGTCTACAGTAACGTCTAATAAAAACAAGTGTTTTGAGTTGTACATTTCATA

Function

NR:

description
PREDICTED: tubulin alpha-8 chain-like isoform X1

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07374 TUBA; tubulin alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622585.2 True 1571 mRNA 0.53 4 7978843 7981203
Loading

Neighbor

gene id symbol gene type direction distance location
LOC101268972 LOC101448022 coding downstream 77928 7898867 ~ 7900915 (-)
stbd1 stbd1 coding downstream 127235 7837607 ~ 7851608 (-)
LOC110523118 LOC106572051 coding downstream 157325 7645369 ~ 7821518 (-)
LOC110536901 LOC106568527 coding downstream 365508 7606957 ~ 7613335 (-)
atp8b1 LOC106568528 coding downstream 392317 7511022 ~ 7586526 (-)
LOC110536914 LOC106568507 coding upstream 146645 8127848 ~ 8205393 (-)
LOC100136343 LOC100136343 coding upstream 264807 8246010 ~ 8252914 (-)
LOC118937621 NA coding upstream 297338 8278541 ~ 8288538 (-)
ptpn13 ptpn13 coding upstream 310348 8291551 ~ 8460671 (-)
arhgap24 arhgap24 coding upstream 613126 8594329 ~ 8809553 (-)
G1034545 NA non-coding downstream 3356 7975190 ~ 7975487 (-)
G1034544 NA non-coding downstream 14425 7963257 ~ 7964418 (-)
G1034520 NA non-coding downstream 27896 7947665 ~ 7950947 (-)
G1034524 NA non-coding downstream 39300 7938766 ~ 7939543 (-)
G1034507 NA non-coding downstream 67685 7910761 ~ 7911158 (-)
G1034547 NA non-coding upstream 2340 7983543 ~ 7983817 (-)
G1034551 NA non-coding upstream 11211 7992414 ~ 7992625 (-)
G1034557 sdad1 non-coding upstream 30756 8011959 ~ 8018606 (-)
G1034563 NA non-coding upstream 51981 8033184 ~ 8033490 (-)
G1034564 NA non-coding upstream 52734 8033937 ~ 8034231 (-)
G1034443 yo84 other downstream 144265 7827880 ~ 7834578 (-)
G1032941 NA other downstream 1778509 6197017 ~ 6200334 (-)
G1032314 NA other downstream 2195479 5782940 ~ 5783364 (-)
LOC110536877 mob3b other downstream 2434335 5538381 ~ 5607736 (-)
G1034667 NA other upstream 298136 8279339 ~ 8279866 (-)
G1035160 NA other upstream 855053 8836256 ~ 8838834 (-)
hcn1 hcn1 other upstream 1037304 9018507 ~ 9206417 (-)
G1035717 NA other upstream 1552297 9533500 ~ 9548135 (-)
LOC110536932 NA other upstream 1704826 9684834 ~ 9696461 (-)

Expression

LOC110536909(LOC106568505) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 250.
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LOC110536909(LOC106568505) Expression in each Bioproject

Bar chart with 19 bars.
LOC110536909(LOC106568505) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 750.
End of interactive chart.

Co-expression Network