Gene
RNA
| Item | Value |
|---|---|
| gene id | ptpn13 |
| gene name | ptpn13 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 8291551 ~ 8460671 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ptpn13 | Predicted to enable phosphatidylinositol 3-kinase regulatory subunit binding activity and protein tyrosine phosphatase activity. Predicted to be involved in peptidyl-tyrosine dephosphorylation. Predicted to act upstream of or within gene silencing by RNA and protein dephosphorylation. Predicted to be located in cytoskeleton. Predicted to be active in cytoplasm and nucleus. Is expressed in ovary. Orthologous to human PTPN13 (protein tyrosine phosphatase non-receptor type 13). |
| description |
|---|
| tyrosine-protein phosphatase non-receptor type 13 |
| id | description |
|---|---|
| K02374 | PTPN13, FAP-1; tyrosine-protein phosphatase non-receptor type 13 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936816.1 | False | 8414 | mRNA | 0.54 | 49 | 8291551 | 8460670 |
| XM_036936814.1 | False | 8553 | mRNA | 0.54 | 50 | 8291551 | 8460671 |
| XM_036936815.1 | True | 8475 | mRNA | 0.54 | 50 | 8291551 | 8460671 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937621 | NA | coding | downstream | 3013 | 8278541 ~ 8288538 (-) |
| LOC100136343 | LOC100136343 | coding | downstream | 38637 | 8246010 ~ 8252914 (-) |
| LOC110536914 | LOC106568507 | coding | downstream | 86158 | 8127848 ~ 8205393 (-) |
| LOC110536909 | LOC106568505 | coding | downstream | 310348 | 7978843 ~ 7981203 (-) |
| LOC101268972 | LOC101448022 | coding | downstream | 390636 | 7898867 ~ 7900915 (-) |
| arhgap24 | arhgap24 | coding | upstream | 133658 | 8594329 ~ 8809553 (-) |
| esm1 | esm1 | coding | upstream | 396960 | 8857631 ~ 8860067 (-) |
| LOC110536920 | NA | coding | upstream | 555325 | 9015996 ~ 9022222 (-) |
| hcn1 | hcn1 | coding | upstream | 576965 | 9018507 ~ 9206417 (-) |
| LOC110536926 | grp | coding | upstream | 1101432 | 9562103 ~ 9564000 (-) |
| G1034655 | NA | non-coding | downstream | 34473 | 8255792 ~ 8257078 (-) |
| G1034654 | NA | non-coding | downstream | 34703 | 8256226 ~ 8256848 (-) |
| G1034649 | NA | non-coding | downstream | 47214 | 8243663 ~ 8244337 (-) |
| G1034644 | NA | non-coding | downstream | 59009 | 8231276 ~ 8232542 (-) |
| G1034610 | NA | non-coding | downstream | 65044 | 8225918 ~ 8226507 (-) |
| G1034746 | NA | non-coding | upstream | 21245 | 8481916 ~ 8483916 (-) |
| G1034748 | NA | non-coding | upstream | 23998 | 8484669 ~ 8485498 (-) |
| G1034751 | NA | non-coding | upstream | 27157 | 8487828 ~ 8489253 (-) |
| G1034777 | NA | non-coding | upstream | 72020 | 8532691 ~ 8587965 (-) |
| G1034781 | NA | non-coding | upstream | 77113 | 8537784 ~ 8539377 (-) |
| G1034667 | NA | other | downstream | 11685 | 8279339 ~ 8279866 (-) |
| G1034443 | yo84 | other | downstream | 456973 | 7827880 ~ 7834578 (-) |
| LOC110523118 | LOC106572051 | other | downstream | 509513 | 7645369 ~ 7821518 (-) |
| G1032941 | NA | other | downstream | 2091217 | 6197017 ~ 6200334 (-) |
| G1032314 | NA | other | downstream | 2508187 | 5782940 ~ 5783364 (-) |
| G1035160 | NA | other | upstream | 375585 | 8836256 ~ 8838834 (-) |
| G1035717 | NA | other | upstream | 1072829 | 9533500 ~ 9548135 (-) |
| LOC110536932 | NA | other | upstream | 1225358 | 9684834 ~ 9696461 (-) |
| sema4d | sema4d | other | upstream | 1444633 | 9901109 ~ 9983793 (-) |
