Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536778 |
| gene name | LOC106568497 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 8866168 ~ 8968377 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| LOW QUALITY PROTEIN: probable E3 ubiquitin-protein ligase HERC1 |
| id | description |
|---|---|
| K10594 | HERC1; E3 ubiquitin-protein ligase HERC1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936833.1 | False | 15133 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| XM_036936835.1 | False | 15130 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| XM_036936836.1 | False | 15130 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| XM_036936837.1 | False | 15118 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| XM_036936838.1 | False | 15109 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| XM_036936839.1 | True | 15004 | mRNA | 0.58 | 81 | 8866168 | 8968377 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC118937876 | NA | coding | upstream | 36788 | 8826581 ~ 8829380 (+) |
| mapk10 | mapk10 | coding | upstream | 279725 | 8472046 ~ 8586443 (+) |
| LOC110536916 | LOC106568505 | coding | upstream | 575051 | 8288572 ~ 8291117 (+) |
| LOC110536912 | LOC106568508 | coding | upstream | 743077 | 8072971 ~ 8123091 (+) |
| LOC110536911 | LOC106568509 | coding | upstream | 802163 | 8041387 ~ 8064005 (+) |
| ccbe1 | ccbe1 | coding | downstream | 380802 | 9349179 ~ 9459891 (+) |
| lman1 | lman1 | coding | downstream | 527197 | 9495574 ~ 9523645 (+) |
| cplx4a | cplx4 | coding | downstream | 564749 | 9533126 ~ 9548216 (+) |
| rx3 | rax | coding | downstream | 582587 | 9550964 ~ 9555427 (+) |
| znf532 | znf532 | coding | downstream | 608659 | 9577036 ~ 9615206 (+) |
| G1034982 | NA | non-coding | upstream | 411 | 8863085 ~ 8865757 (+) |
| G1034981 | NA | non-coding | upstream | 3600 | 8862324 ~ 8862568 (+) |
| G1034975 | NA | non-coding | upstream | 21164 | 8844733 ~ 8845004 (+) |
| G1034971 | NA | non-coding | upstream | 25630 | 8840253 ~ 8840538 (+) |
| G1034954 | NA | non-coding | upstream | 40229 | 8825676 ~ 8825939 (+) |
| G1035023 | NA | non-coding | downstream | 6327 | 8974704 ~ 8974910 (+) |
| G1035024 | NA | non-coding | downstream | 9585 | 8977962 ~ 8978179 (+) |
| G1035025 | NA | non-coding | downstream | 11623 | 8980000 ~ 8980578 (+) |
| G1035038 | NA | non-coding | downstream | 34496 | 9002873 ~ 9003389 (+) |
| G1035060 | NA | non-coding | downstream | 79177 | 9047554 ~ 9049052 (+) |
| G1034024 | NA | other | upstream | 601878 | 8262161 ~ 8264290 (+) |
| G1033822 | stbd1 | other | upstream | 1014617 | 7837686 ~ 7851551 (+) |
| G1033821 | yo84 | other | upstream | 1031792 | 7827978 ~ 7834376 (+) |
| G1033752 | LOC106568522 | other | upstream | 1217941 | 7647649 ~ 7648227 (+) |
| G1033419 | NA | other | upstream | 1512164 | 7353631 ~ 7354004 (+) |
| G1035405 | NA | other | downstream | 282544 | 9250921 ~ 9251578 (+) |
| G1035825 | nedd4l | other | downstream | 794870 | 9763247 ~ 9764989 (+) |
| G1035997 | sema4d | other | downstream | 938768 | 9907145 ~ 9910373 (+) |
| G1036179 | NA | other | downstream | 1217339 | 10185716 ~ 10186413 (+) |
