Gene
RNA
| Item | Value |
|---|---|
| gene id | hcn1 |
| gene name | hcn1 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 9018507 ~ 9206417 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| hcn1 | Predicted to enable cAMP binding activity; sodium channel activity; and voltage-gated potassium channel activity. Acts upstream of or within neuron-neuron synaptic transmission and posterior lateral line neuromast hair cell development. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in neuromast hair cell. |
| description |
|---|
| PREDICTED: phosphofurin acidic cluster sorting protein 2-like |
| id | name | namespace |
|---|---|---|
| GO:0071805 | potassium ion transmembrane transport | biological_process |
| GO:0034765 | regulation of ion transmembrane transport | biological_process |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0005249 | voltage-gated potassium channel activity | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005034825.1 | False | 8426 | mRNA | 0.43 | 9 | 9037636 | 9206417 |
| XR_005034826.1 | False | 8393 | mRNA | 0.43 | 9 | 9037636 | 9206417 |
| NM_001124318.1 | False | 3018 | mRNA | 0.55 | 8 | 9043077 | 9206417 |
| TU1179584 | False | 4713 | TUCP | 0.37 | 6 | 9018507 | 9042680 |
| TU1179580 | False | 4564 | lncRNA | 0.37 | 2 | 9037587 | 9042680 |
| TU1179583 | False | 4763 | TUCP | 0.37 | 2 | 9037587 | 9042680 |
| TU1179591 | False | 4763 | TUCP | 0.37 | 3 | 9037587 | 9042680 |
| TU1179602 | False | 4464 | lncRNA | 0.37 | 3 | 9037587 | 9042680 |
| TU1179609 | False | 4597 | lncRNA | 0.37 | 3 | 9037587 | 9042680 |
| TU1179610 | False | 4862 | TUCP | 0.37 | 4 | 9037587 | 9042680 |
| TU1179624 | False | 4550 | TUCP | 0.37 | 4 | 9037587 | 9042680 |
| TU1179630 | True | 4895 | TUCP | 0.37 | 3 | 9037587 | 9042680 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110536920 | NA | coding | downstream | 15414 | 9015996 ~ 9022222 (-) |
| esm1 | esm1 | coding | downstream | 177569 | 8857631 ~ 8860067 (-) |
| arhgap24 | arhgap24 | coding | downstream | 228083 | 8594329 ~ 8809553 (-) |
| ptpn13 | ptpn13 | coding | downstream | 576965 | 8291551 ~ 8460671 (-) |
| LOC118937621 | NA | coding | downstream | 749098 | 8278541 ~ 8288538 (-) |
| LOC110536926 | grp | coding | upstream | 355686 | 9562103 ~ 9564000 (-) |
| LOC110536932 | NA | coding | upstream | 479872 | 9684834 ~ 9696461 (-) |
| nedd4l | nedd4l | coding | upstream | 488665 | 9695082 ~ 9803536 (-) |
| dnajc21 | dnajc21 | coding | upstream | 670113 | 9876530 ~ 9887383 (-) |
| bxdc2 | brix1 | coding | upstream | 685186 | 9891603 ~ 9896872 (-) |
| G1035246 | NA | non-coding | downstream | 59256 | 8978164 ~ 8978380 (-) |
| G1035245 | NA | non-coding | downstream | 59589 | 8977847 ~ 8978047 (-) |
| G1035180 | NA | non-coding | downstream | 152887 | 8883561 ~ 8884749 (-) |
| G1035170 | NA | non-coding | downstream | 171945 | 8863113 ~ 8865691 (-) |
| G1035168 | NA | non-coding | downstream | 185379 | 8851866 ~ 8852257 (-) |
| G1035401 | NA | non-coding | upstream | 40101 | 9246518 ~ 9246720 (-) |
| G1035406 | NA | non-coding | upstream | 44504 | 9250921 ~ 9251979 (-) |
| G1035466 | NA | non-coding | upstream | 137769 | 9344186 ~ 9344978 (-) |
| G1035578 | NA | non-coding | upstream | 226263 | 9432680 ~ 9433250 (-) |
| G1035536 | NA | non-coding | upstream | 252922 | 9459339 ~ 9459880 (-) |
| G1035160 | NA | other | downstream | 198802 | 8836256 ~ 8838834 (-) |
| G1034667 | NA | other | downstream | 757770 | 8279339 ~ 8279866 (-) |
| G1034443 | yo84 | other | downstream | 1203058 | 7827880 ~ 7834578 (-) |
| LOC110523118 | LOC106572051 | other | downstream | 1255598 | 7645369 ~ 7821518 (-) |
| G1032941 | NA | other | downstream | 2837302 | 6197017 ~ 6200334 (-) |
| G1035717 | NA | other | upstream | 327083 | 9533500 ~ 9548135 (-) |
| sema4d | sema4d | other | upstream | 698887 | 9901109 ~ 9983793 (-) |
| LOC110536951 | cr032 | other | upstream | 1643785 | 10850171 ~ 10860150 (-) |
| G1037216 | NA | other | upstream | 1896667 | 11103084 ~ 11103448 (-) |
| G1035295 | NA | non-coding | upstream | 37386 | 9080066 ~ 9081371 (-) |
| G1035301 | NA | non-coding | upstream | 51474 | 9094154 ~ 9095023 (-) |
| G1035306 | NA | non-coding | upstream | 55293 | 9097973 ~ 9098563 (-) |
| G1035312 | NA | non-coding | upstream | 74489 | 9117169 ~ 9117839 (-) |
| G1035335 | NA | non-coding | upstream | 116465 | 9159145 ~ 9160350 (-) |
| LOC100136343 | LOC100136343 | coding | downstream | 765593 | 8246010 ~ 8252914 (-) |
