cplx4a (cplx4)


Basic Information

Item Value
gene id cplx4a
gene name cplx4
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9533126 ~ 9548216 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622603.2
TGTGTGTTAAAAATAGAGGCAGAAAACCAGGCCATCTGCCTCTTAGCATCGTGGGGCTGTAGTGAGGTTTAATCCAGATTACGGCTGAccgtattttttgttgttggtgtCTGTTCCCTAGCCGTCAGTGCATCCTTCATTACACACCCAGGCAGCAGGACAGGTTAGCTAGACAGAATATACAGGATCCCATTGGACCTAACCAACCGCTAGCAATCCCAACCCAACGGTAGAAGCCAGGGAAGCAACTAGTCCTATTTACAATAATATAATATCTATATATCCTAGTACAGCAGAAATCTATAGGGGATCAAGATGTTCCTAATCAAGACCATGATGCCTAACCCACTGGCTGGTTTGAATCctatgggtggaggagaggaggaagcggAGGCGGCCCCTGCAGACCCGGCCAAGGCAGCAGGGATGACACGCGAGGAGTATGAGGAGTACCAAAAACAGTTGGTGGAGGAGAAGATGGAAAGAGATGCCGACTTCTTACACAAGAAAGCTGAGAGGGCAACTCTGCGGGTGTGCCTACGAGACAAGTACAGACTCCCAAAGAGCGAGCAGGACGATAACATGCTGGCCATGGCTGGAGACGACGTGGACGTACCCGAGGAGCTGCTCAAGATGGTGGACGAGGATGCCAcggaggaggaggacaaggacTCCATCTTGGGTGGCATTCAGAACCTCCAGAACATGGACATGGACCAGCTCAAGGAGAAGGCCTCGGCCACCGTGACGGAGATGAAAGCCAAGGCAGAGGAGAAATGCTCTGtcatgtaaaataaaaataaaatggaaGATTTCACTTCATGAACAGCCGGTCCCAATTCTAGCCCGATTCGATCCCTTGGCCCTAACCCTTCAATGTTTGCAGATCTGAAGGTGGAAAAACATGGTGGAAGCTGTACCACCACACTGCCTATACTTATTAAGACCATTAGACATGCTAACATAGAGGTGTAAGGGAAcaagggggagggaaagggagtgaTTTAGGACCGACTGTAAACAAACCGATCCTATAAGAATCTCCACTCTCCACCCAGCAGACCTGGGTTTAAAATAAGTATCTGAGCTATTTTAAAGCTCCTATGCTCAACTGGTGGACCACATCTATTTATTGTTAAAATAATGGAACTCGATCGGGCTTTGACCCCTGGTATCATTTAAACACACATaagatgtgtagaattgcaggaaattagctttgaaATAGCAACAAAATTCTCTGTCCCATGtgaaatgtgtagaactgcaggaaattagctttaaaactgcaacattttctctccgccaacaagaggggtgtgaacagtttggggtcCAATGGGTTGTGAGGTAGGGTTCGTTACTACGCCGATAAATGACATTATCCATCTGGACCTTAGCCACATAGAACATTTGTTTGACCGGACCTTCTCAACTAGTACTTGAGTACCCCTGTTTTAAAGTCTCCTTTGAGTGTTTTGAATGAGCCTGTCTGGGGAGTGCCAGATGGACGGGCCGAGTTGGTTTGCACTTTTGGTAGCATTCCATTGGCTCCATAAAAGCTCAATCAAGCTCAGCTGAAAGAAAAcagatactatttgaacccaggtctaagagagtcctctatctccccctatcaATGATCAAAGCTGTGAAATCTGCTTGGCGACATCCAATGGTAGCAGGTCTTTACTGAAATGGAAGTTAATTTCCCAAACAACTTCTTGTGTGAATCGGTTTATGTTTTGAAGTCTCCCTGTAATTTGCTGTTTGTTTAACTTGTAAAAGTACGTAttttttttgtatgtgtgtgaatgaATGCTGTTTTAGATTGTTTCTCCCCAATTTGTGTTATTCTCCATGTTTCATCTGTTAATTAGGAAATGATGGCACCTCATGATGGCCACTTCTTTTACACTTTTTTTTCAACTGACAGTATTTTGGACAGTTGCAAAATGCATTCTGTTGCAtatcctcctccacacacacaataGTACATCTTTGACAAATCACCTCTATCAATGTTTATCCAAAACAACGAGCATAAAACACGCCTGTAAGAGATAAATTCTTGCGGTTTTGCACAGTCCAtcatttaaataaaatatatagtcTTTATTCCATAATTAAACAAACTGTACATTAACATTGACTGACACACTGGAGTACTAATGTTAAGGATATTGGATTACTCTAAAACATATGTATATTAAATGTAAGGTTATGTTGTGCTGTTAGAATTATACATGTTCATGCAGAAGCCAATGACAAATAAAACGACTGACTTGTATA
>TU1180049
TCTGCTCTGCTAGGTGTTAATGTGGCTCTGGGGAGTGAAGACAGTGTTGGTTGAGCGACGTTGACagccacaacaaccacatctaGGATCGATTCGGTAGAATAATCTACTGAATCTGTTTGGATCTATTGAAAGCTGCTTGATAAGGAAGATATTTTTAACCAGTTGTTATGACGAGCGAAAATAAGAGCGAGCAGGACGATAACATGCTGGCCATGGCTGGAGACGACGTGGACGTACCCGAGGAGCTGCTCAAGATGGTGGACGAGGATGCCAcggaggaggaggacaaggacTCCATCTTGGGTGGCATTCAGAACCTCCAGAACATGGACATGGACCAGCTCAAGGAGAAGGCCTCGGCCACCGTGACGGAGATGAAAGCCAAGGCAGAGGAGAAATGCTCTGtcatgtaaaataaaaataaaatggaaGATTTCACTTCATGAACAGCCGGTCCCAATTCTAGCCCGATTCGATCCCTTGGCCCTAACCCTTCAATGTTTGCAGATCTGAAGGTGGAAAAACATGGTGGAAGCTGTACCACCACACTGCCTATACTTATTAAGACCATTAGACATGCTAACATAGAGGTGTAAGGGAAcaagggggagggaaagggagtgaTTTAGGACCGACTGTAAACAAACCGATCCTATAAGAATCTCCACTCTCCACCCAGCAGACCTGGGTTTAAAATAAGTATCTGAGCTATTTTAAAGCTCCTATGCTCAACTGGTGGACCACATCTATTTATTGTTAAAATAATGGAACTCGATCGGGCTTTGACCCCTGGTATCATTTAAACACACATaagatgtgtagaattgcaggaaattagctttgaaATAGCAACAAAATTCTCTGTCCCATGtgaaatgtgtagaactgcaggaaattagctttaaaactgcaacattttctctccgccaacaagaggggtgtgaacagtttggggtcCAATGGGTTGTGAGGTAGGGTTCGTTACTACGCCGATAAATGACATTATCCATCTGGACCTTAGCCACATAGAACATTTGTTTGACCGGACCTTCTCAACTAGTACTTGAGTACCCCTGTTTTAAAGTCTCCTTTGAGTGTTTTGAATGAGCCTGTCTGGGGAGTGCCAGATGGACGGGCCGAGTTGGTTTGCACTTTTGGTAGCATTCCATTGGCTCCATAAAAGCTCAATCAAGCTCAGCTGAAAGAAAAcagatactatttgaacccaggtctaagagagtcctctatctccccctatcaATGATCAAAGCTGTGAAATCTGCTTGGCGACATCCAATGGTAGCAGGTCTTTACTGAAATGGAAGTTAATTTCCCAAACAACTTCTTGTGTGAATCGGTTTATGTTTTGAAGTCTCCCTGTAATTTGCTGTTTGTTTAACTTGTAAAAGTACGTAttttttttgtatgtgtgtgaatgaATGCTGTTTTAGATTGTTTCTCCCCAATTTGTGTTATTCTCCATGTTTCATCTGTTAATTAGGAAATGATGGCACCTCATGATGGCCACTTCTTTTACACTTTTTTTTCAACTGACAGTATTTTGGACAGTTGCAAAATGCATTCTGTTGCAtatcctcctccacacacacaataGTACATCTTTGACAAATCACCTCTATCAATGTTTATCCAAAACAACGAGCATAAAACACGCCTGTAAGAGATAAATTCTTGCGGTTTTGCACAGTCCAtcatttaaataaaatatatagtcTTTATTCCATAATTAAACAAACTGTACATTAACATTGACTGACACACTGGAGTACTAATGTTAAGGATATTGGATTACTCTAAAACATATGTATATTAAATGTAAGGTTATGTTGTGCTGTTAGAATTATACATGTTCATGCAGAAGCCAATGACAAATAAAACGACTGACTTGTATAAAATGGCTGACTTTTTGACGTTATTTCTCTTATAGCTGTTCACAGATCCAAAGCCTTCTAT

Function

symbol description
cplx4 Predicted to enable SNARE binding activity. Predicted to be involved in regulation of neurotransmitter secretion and synaptic vesicle exocytosis. Predicted to be located in plasma membrane and synapse. Predicted to be part of SNARE complex. Predicted to be active in terminal bouton.

NR:

description
PREDICTED: complexin-4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622603.2 False 2292 mRNA 0.43 3 9533126 9548155
TU1180049 True 1977 TUCP 0.41 2 9540539 9548216
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Neighbor

gene id symbol gene type direction distance location
lman1 lman1 coding upstream 9481 9495574 ~ 9523645 (+)
ccbe1 ccbe1 coding upstream 73235 9349179 ~ 9459891 (+)
LOC110536778 LOC106568497 coding upstream 564749 8866168 ~ 8968377 (+)
LOC118937876 NA coding upstream 703746 8826581 ~ 8829380 (+)
mapk10 mapk10 coding upstream 946683 8472046 ~ 8586443 (+)
rx3 rax coding downstream 2809 9550964 ~ 9555427 (+)
znf532 znf532 coding downstream 28881 9577036 ~ 9615206 (+)
oacyl LOC106568496 coding downstream 67856 9616008 ~ 9624733 (+)
LOC110536930 LOC106568494 coding downstream 76771 9624926 ~ 9633957 (+)
alpk2 alpk2 coding downstream 109118 9657273 ~ 9683987 (+)
G1035614 NA non-coding upstream 24827 9507621 ~ 9508299 (+)
G1035603 NA non-coding upstream 51758 9481074 ~ 9481368 (+)
G1035602 NA non-coding upstream 52342 9480489 ~ 9480784 (+)
G1035590 NA non-coding upstream 70665 9460881 ~ 9462461 (+)
G1035530 NA non-coding upstream 87543 9445120 ~ 9445583 (+)
G1035643 grp non-coding downstream 14029 9562184 ~ 9563225 (+)
G1035775 NA non-coding downstream 90285 9638440 ~ 9695188 (+)
G1035791 NA non-coding downstream 127406 9675561 ~ 9676604 (+)
G1035782 NA non-coding downstream 138136 9686291 ~ 9686940 (+)
G1035405 NA other upstream 281548 9250921 ~ 9251578 (+)
G1035014 NA other upstream 577889 8954793 ~ 8955237 (+)
G1034024 NA other upstream 1268836 8262161 ~ 8264290 (+)
G1033822 stbd1 other upstream 1681575 7837686 ~ 7851551 (+)
G1033821 yo84 other upstream 1698750 7827978 ~ 7834376 (+)
G1035825 nedd4l other downstream 215092 9763247 ~ 9764989 (+)
G1035997 sema4d other downstream 358990 9907145 ~ 9910373 (+)
G1036179 NA other downstream 637561 10185716 ~ 10186413 (+)
ctif ctif other downstream 876211 10237527 ~ 10430266 (+)
G1036319 NA other downstream 922160 10470315 ~ 10473073 (+)

Expression

cplx4a(cplx4) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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cplx4a(cplx4) Expression in each Bioproject

Bar chart with 13 bars.
cplx4a(cplx4) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8000.
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Co-expression Network