rx3 (rax)


Basic Information

Item Value
gene id rx3
gene name rax
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9550964 ~ 9555427 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622604.2
TACGTGTCTTGGTGGGGAGGTGGGGGCTGTCACATGGGCGGAGTGAAGGGGGTCTTACCATAAGGAGTACTTTATAAACCCCAGAAGATACAGCCTCCTCTATGAGACAAGACCACTACTGGAGTGTCAGCTAGTAGACAAACAGGTGCCTCTACTACTCAGATGCGACGGATGCTTACTAACGCAGATTTTTTTTCAATTCGATTTTAGATTTTTATTTCAACAAAACAACCGGAATTGTTGTTTCAATCTATTTAACATTTAGTGTTTCATTCTATAAAAACATTTTGCTATTCATTCTGAACACTTAAAACTTTGTTTTAAAAGTACATGTCTCTTGAGTTTAGGCTACATTTGTTAATCAGTGTCATTTCAATTTAGTTTGAGATTATTATTTGTTCATCAAATGTGGCTACTTGGTTCAACTCCTGAAGTCATGGAAGAGCGCCTGTCACCTTCTGCGTGTTTCGTCCGGAACCCCGGCAATAACCATAACACCGCAGCAGCGAGGGTTCACAGTATTGAAGCAATATTGGGATTTAAAGACGAAAACATATATAATCAATCTGTCTCATACAATGGATCATCGGGGAAACTCGCCGAGCGGAGAGGGAACGGAATTATGTCATCCCTGAAGAAAGAACACAACACGGAACGTTTTGACAGTGTCTGCTGCAGCAGTTCGGGGGCCTCTGTTAGTCCTGATTTACCTGACGGGGAGGATAAACTGTCCGATGATGATAACCCAAAGAAAAAGCACCGGCGCAACAGGACTACGTTCACAACCTTTCAGCTGCATGAGCTGGAGAGAGCGTTCGAGAAGTCGCACTATCCTGACGTCTACAGCAGAGAGGAGCTCGCGATGAAAGTGAATCTTCCGGAGGTTCGAGTGCAGGTGTGGTTCCAGAACCGTCGGGCCAAGTGGCGTCGCCAGGAGAAGCTGGAGGTGAGTTCCATTAAGCTTCAGgacacctcctctctcctgtccttcaGCCGCTCCCCTTCCCAGTCTTTGGGCTCCGGACTGCAGCTGGAGCCATGGCTCAGCACTGCCATCACCTCCACCCCACTGCAGTCCCTACCCGGCTTCATTACCAGCTCCTCTCAGGGCCTCCCAGGAGCCTCCAGCTACTCCCCTCCAGCCTTCCTCAACTCCCCCAGTTTCGGACACCATAACCTGCCTCACATTGGTTCTACGCGCCCTCTTCCTCCACCCCCATACCAGTGCGCCGTGGCTGGGTACATGGACAAGTTAGTCATGGAAGAGACGGATCCTCGTAATTCTAGTATTGCGTCTCTGAGAATGAAGGCTAAGGAGCATATTCAGTCTATTGGGAAGAcatggtgaggatggatggatgctgTCTGCGTCCCTCTGACTGGGGCCAACACTTTAAAGACTACTACTTCATGCAGTGCTGCTGCTCTAGTCTGTGGACATGGAAGTCCACTGTGCTAGAGGACTAGAGGACTCCACGAGATGATGAAAACTATTGTTTCTTCTTCAGTGGTTTACATCATCGTCCCagtcagtgtttttttttgtgaattctCAGTATTGGAGGAGGAACAACCATGTCTAATTTCAGATGTTCACATTTTATAATGAACTTTAACTGTCAGTGTTATGCTTGGATTCACCAAGATCCATCCAGTCTGCTTTTAATGAAAAATGAAGGATGCCATTGATGAGAAAGTAGAAATGTGAAATGTTTGTCTATGTTGCTCGCAACCTGCTTTCCTTGTCATAATTTCCATCCCTATTTGAACAATTCTCTTCTGTTATTCTGCTAAGACAATCCCATCCCAGGGTCAATGTATGTATTGTTgtttaccaacccttatttaggTACCTTTCtttcagtatttttccattttGTGCTGCTGACtttacaaacaaacaaatgtCAATTTGCTGTAATTAGTTTCACTCTGTACGTGAATGATATTATGGAAATAAACCTGTATATTTACATCAACCCTCCAGGCTGACAATGTGCAAACTCATCCTTCTTTCATTAATTGTCAAGCCTAAAAAGccatatttaagcaataagacccgggtaggtgtggtatatggccaatataccactgctaagggccgTGGTATATTATCCATATATCACAAAGATAATATACAATATAACTCCTGTCTTTTCCAAGAGGTTTGTTTTTACTCAATACTTTCACTTTTTAGAAAACAGGTGGTTCTATACTGCAAATTGAAATCACAAATCACAGAGCAGGACACGTGAATGTGGTGTCTGGTTCCCTCCAGTGGACATTAGTCTTATGACGGGTGGGAAGTGAGCTGGCAATCAAATAATCTATGGatatcaaatcctagatgccatcGCCTGCTGTTGTacacttgagcaaggcacttaaccccccacaacaacaggTGTCCAGAGTGGCAGCCCCCTTGACCTCTCTAAAAacacctgtgtatgtgtgtctttcggAAGGGTTGCGTTAAAAGAAGAAGTTACATTTCATTTGGACCTTGTGTGCAATTGGTCAATAAAGTAATGTGAATCTTTAGCGGCAGCCAATACAATTGAAACTCACCAAGTCAGCTCTTAAGACTCAACTTCCACTTGAGTCAAATTTATACTTTTAATTTCCCATCGACATCAACGCACGACCAAGTGAAAAttctacttacagtgccttcagaaagtattcaacccccttgactttttccacattttgttgtgttacatcctgaaaaTTTGTGTCACTAATCTTCACACAATATCCCATGATGTCACAATATCCCATGATGTCACAATATCCCATGATGTCACAatatcccatgatgtc

Function

symbol description
rax Enables DNA-binding transcription activator activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in positive regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Predicted to be part of chromatin. Implicated in isolated microphthalmia 3.

NR:

description
retinal homeobox protein Rx

GO:

id name namespace
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09332 RAX, RX; retina and anterior neural fold homeobox protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622604.2 True 2826 mRNA 0.44 3 9550964 9555427
Loading

Neighbor

gene id symbol gene type direction distance location
cplx4a cplx4 coding upstream 2809 9533126 ~ 9548216 (+)
lman1 lman1 coding upstream 27319 9495574 ~ 9523645 (+)
ccbe1 ccbe1 coding upstream 91073 9349179 ~ 9459891 (+)
LOC110536778 LOC106568497 coding upstream 582587 8866168 ~ 8968377 (+)
LOC118937876 NA coding upstream 721584 8826581 ~ 8829380 (+)
znf532 znf532 coding downstream 21609 9577036 ~ 9615206 (+)
oacyl LOC106568496 coding downstream 60584 9616008 ~ 9624733 (+)
LOC110536930 LOC106568494 coding downstream 69499 9624926 ~ 9633957 (+)
alpk2 alpk2 coding downstream 101846 9657273 ~ 9683987 (+)
prlra prlr coding downstream 254545 9809972 ~ 9841662 (+)
G1035614 NA non-coding upstream 42665 9507621 ~ 9508299 (+)
G1035603 NA non-coding upstream 69596 9481074 ~ 9481368 (+)
G1035602 NA non-coding upstream 70180 9480489 ~ 9480784 (+)
G1035590 NA non-coding upstream 88503 9460881 ~ 9462461 (+)
G1035530 NA non-coding upstream 105381 9445120 ~ 9445583 (+)
G1035643 grp non-coding downstream 6757 9562184 ~ 9563225 (+)
G1035775 NA non-coding downstream 83013 9638440 ~ 9695188 (+)
G1035791 NA non-coding downstream 120134 9675561 ~ 9676604 (+)
G1035782 NA non-coding downstream 130864 9686291 ~ 9686940 (+)
G1035405 NA other upstream 299386 9250921 ~ 9251578 (+)
G1035014 NA other upstream 595727 8954793 ~ 8955237 (+)
G1034024 NA other upstream 1286674 8262161 ~ 8264290 (+)
G1033822 stbd1 other upstream 1699413 7837686 ~ 7851551 (+)
G1035825 nedd4l other downstream 207820 9763247 ~ 9764989 (+)
G1035997 sema4d other downstream 351718 9907145 ~ 9910373 (+)
G1036179 NA other downstream 630289 10185716 ~ 10186413 (+)
ctif ctif other downstream 868939 10237527 ~ 10430266 (+)
G1036319 NA other downstream 914888 10470315 ~ 10473073 (+)

Expression

rx3(rax) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
End of interactive chart.

rx3(rax) Expression in each Bioproject

Bar chart with 9 bars.
rx3(rax) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network