LOC110536932


Basic Information

Item Value
gene id LOC110536932
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9684834 ~ 9696461 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475525.2
ACAtaaagggaggggaagggaaagcAACATTCCCAAatgctgactgtctctctgtctacacacCTGCGCCTCTCCACAGACCTGCGTCAACCCACCATGGACTGCTGCAAACCGGACTGGACTTGTAGGGCTACCTGGTCTTTACCGAAGAGCCTGGATGAGACGGTACAAAGAAGGAGACACATGCtttgtctgaaatggcaccacTTGAGCATACAGGGAAAATGGTGTGGTTTTGGATGCACTCAGAGAGCAGTCCTGTCCTGGGGCCTACAGAGAGGGAGTGGAACGGGGAGAGGGGCCAAGACGGTCCACCAACAAGTAGTCTCACGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTA
>TU1180325
gggaagtgtagcaaagaatgtctacagcattgtaggtccccaagaacacagatttctcaatcattcttaaatggaggaagtttgaaaccaccaagactattcatagagttggctgcccggccaaactgagcaatcgggggagaagggccttggtcagggagTCTGTACTGTTACATGGCAGTCTCACTAGTTATCAGTCTAAATTCATTTTAAGACTGAAATACTATTTGTAGGTGGTCATTTCTACATTGAAACACATCCAACAGCCTATGAAATTCCCCAGGGACAAACGTACAATAGATgactaatctctctctcccccacatccCAGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTACATAATGTTGGTCTTTGGTGTCTAGTTTAATGACTGTAGGACATGGGTTGGTCTTTGGTGTCTAGTTTAATGGCTGTAGGACATGACCTTTCACACTTTGGAAGTTTAAATTCCAATAAAGTTTACTGTTTCAGTGAGACTCACTAGGCAGAAAAACAACACTTCCTGGGACACAAAGAGGGAGCCTACAGTGTTAATGGGGCCGTTGGTTTTCAGACAATCAGTCACAGGAGGTTGCTGGGAcctggggaggatgggctcctgGTAATGATTGGGGCGGAATGAGTGGAATGATGTCAAATACATTaaccacatggtttccatggtttccaggtgtttgatgccattccattagctcTATTCCAGCCATTTCCTCTTATTGCAGCCTCCACTACAGCAGAGGGTGGAGAAGAAAAGCTACAAGTTATATGCAAGGAAACCATGAATGAAGTCAAGCCAACCTGCCGGTTCCAAGTGGGGAAGAGCATCTGCTTTCTTTTTCAAATAGAAATAACAGCATTCTCCATGCACCTTAATTGATACATTTATAAAACCTAAATAAATTAGTAATCCGTCTGGAGAAGTGGATTGTAAAAGCAGCCATatggaagcaaactgaaaatCATATCACCATGAAATGAATTGTGGCCACATTGAAATAGGACAAAAATAGCTGTGCCATTCCGATTTTAGTTTGCGTGCCCTTGTGATTTTCTTGGATGACATTTGGAGACCCAAGCTGATGGGCTGAAACTGCCGAGTTGATGTACGCGTTTTAGAATGGTTGGATTATACGCCCgggtttttttgttttattttacaatttgtatCATGTTAAACATTAGCCACTATCGTTAGCCACCATCAGTAATAAccacatatatttatttttgcatcattccattccatttacctttctttcctctgtcacgtcCGTGTGAATTGTTCCTGAGACTCGCTAGTAATATTGGATTAAATTAGGCAAACGTTGTGCAATAATTGGGGGCCACGTAACGTAGCCTGTTTGCATCATTATAGAACTCAGTCCGCACATAGcaggttaaacctggagcctggcgcaCGGTTCAAGACGACTGGACCGTTGATGATTAGTGAGAATTAGGATGGATTTTATTGTTCAACCCTTATTGTACACTTTTTTCTAACTTCCAATATTTAATGTATTGAACTTGACTATGACAACtttcagaatgaatcaaaccactgtattttttATTCATTAATATATTCTGTGCATAAAGGCTCTCcaaactgttttttattttattcgtACATAGGCTATTTCCTAACCGCCAAATCTGcctaaataatctacaagatcaaagtatttttaaatctaccagttGGTTCTGAAACTGAAACAAATATACATAGATGGCTGTCTTTCATTGATTCCTACGGTATATTCTCTATTTAACGGGATGGTTTAAGATA
>TU1180323
ggaagggaaagcAACATTCCCAAatgctgactgtctctctgtctacacacCTGCGCCTCTCCACAGACCTGCGTCAACCCACCATGGACTGCTGCAAACCGGACTGGACTTGTAGGGCTACCTGGTCTTTACCGAAGAGCCTGGATGAGACGGTACAAAGAAGGAGACACATGCtttgtctgaaatggcaccacTTGAGCATACAGGGAAAATGGTGTGGTTTTGGATGCACTCAGAGAGCAGTCCTGTCCTGGGGCCTACAGAGAGGGAGTGGAACGGGGAGAGGGGCCAAGACGGTCCACCAACAAGTAGTCTCACGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTACATAATGTTGGTCTTTGGTGTCTAGTTTAATGACTGTAGGACATGGGTTGGTCTTTGGTGTCTAGTTTAATGGCTGTAGGACATGACCTTTCACACTTTGGAAGTTTAAATTCCAATAAAGTTTACTGTTTCAGTGAGACTCACTAGGCAGAAAAACAACACTTCCTGGGACACAAAGAGGGAGCCTACAGTGTTAATGGGGCCGTTGGTTTTCAGACAATCAGTCACAGGAGGTTGCTGGGAcctggggaggatgggct
>TU1180320
ggaagggaaagcAACATTCCCAAatgctgactgtctctctgtctacacacCTGCGCCTCTCCACAGACCTGCGTCAACCCACCATGGACTGCTGCAAACCGGACTGGACTTGTAGGGCTACCTGGTCTTTACCGAAGAGCCTGGATGAGACGGTACAAAGAAGGAGACACATGCtttgtctgaaatggcaccacTTGAGCATACAGGGAAAATGGTGTGGTTTTGGATGCACTCAGAGAGCAGTCCTGTCCTGGGGCCTACAGAGAGGGAGTGGAACGGGGAGAGGGGCCAAGACGGTCCACCAACAAGTAGTCTCACGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTACATA
>TU1180321
gactgtctctctgtctacacacCTGCGCCTCTCCACAGACCTGCGTCAACCCACCATGGACTGCTGCAAACCGGACTGGACTTGTAGGGCTACCTGGTCTTTACCGAAGAGCCTGGATGAGACGGTACAAAGAAGGAGACACATGCtttgtctgaaatggcaccacTTGAGCATACAGGGAAAATGGTGTGGTTTTGGATGCACTCAGAGAGCAGTCCTGTCCTGGGGCCTACAGAGAGGGAGTGGAACGGGGAGAGGGGCCAAGACGGTCCACCAACAAGTAGTCTCACGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTACATA
>TU1180324
ggaagggaaagcAACATTCCCAAatgctgactgtctctctgtctacacacCTGCGCCTCTCCACAGACCTGCGTCAACCCACCATGGACTGCTGCAAACCGGACTGGACTTGTAGGGCTACCTGGTCTTTACCGAAGAGCCTGGATGAGACGGTACAAAGAAGGAGACACATGCtttgtctgaaatggcaccacTTGAGCATACAGGGAAAATGGTGTGGTTTTGGATGCACTCAGAGAGCAGTCCTGTCCTGGGGCCTACAGAGAGGGAGTGGAACGGGGAGAGGGGCCAAGACGGTCCACCAACAAGTAGTCTCACGGTGAGTTACCGTAGGATCTCAAGGAGCACGTCATCTAACACAAGACAACACCATCAAGGAGGGGGAATTGGTGTATTTCAGAAGAAGATGCATGTTGTACTAGACCGGACTAGACTGGATCGGACTGGACGAAACCGGACTAGACTGGATCGGACTGGACGAAACCGGACTAGACTGGATCGGACTGGACGAAACCGGACTAGACTGACTGCTCCATCTGACAAGCGGCAGGTTTATTCACATAGTTGAGTAGAGCCTTACTGCAGATGGATGAATGGTCACCGAAGCTCATAATGTGAGGAGAAATGAGCCTTTACATAGCAGACCTGTATATCCTACTGTAGTGCACCTGTATATATCTTTATATACTACTTCCTACTGTAGTACACCTGTATATATCTTTATATACTACTTCCTACTGTAGTACACCTGTATATATCTTtatatactatattctactgtagtacacctgaccccttgactttttacacgttttgttatgttacagccttattctaaaaatctttatttttatttttatgtaatcCTCAGCactatacacacaataccccataatgacaaagcgtgCACAGGTTTTtaaatttttttgcaaatgtattacaaataaagaacagaaatacctcatttaaATAAATTGCACATCTATCGACACACACCTGTccttataaggtcccacagatgacaggaatttttcgtagagctccgagacaggattgtgtcgaggcacacatCTGGGGAAGTGAACCAAAAAttgcctgcagcattgaaggtccacaataatacagtggcctccatcattcttaaatggaaggagtttggaatccaccaagactcttcatagagttggccacccggccaaactgagcaatcgggggaaaagggccttccTTGGTCAGGGAGTCTGTACTGTTACATGGCAGTCTCACTAGTTATCAGTCTAAATTCATTTTAAGACTGAAATACTATTTGTAGGTGGTCATTTCTACATTGAAACACATCCAACAGCCTATGAAATTCCCCAGGGACAAACGTACAATAGATgactaatctctctctcccccacatccCAGGTATTCCCTTCCCTCCGTCTTTATCCTCCGAAGCTGTGGAGTGTGACAATGGTGTTTGTGTCCTCTGCTATCAAACGCCATTTTCACACTAAATAGCTACGTTGAGAAGAGAACAGCGTCACCGCGACCCCGTGTCCTGAAGTCAGTCAAACAGAGACAGTGGCGGGGAAGTAAGGGTCACACCTTACATGGCCATATATCCTGGTTGGTTAACTCAATGCGGTTTGGTTCTCTCTTCACAGGCCTTGAATCTTGTTGTTGCTGGTTTGAGAGGGGATTGTTGTTGCATGTATTCCTCCTACCCACCATGGGAAATAAGGTCATGAACTAAATACAGAGAGCGTATAAAGTTTGTAGTTTGAGTAAAGTTTGGCTGGATGAGATTTTAATACGACTGGTCGTGATTGATCACATGCTGACTGTAAAATGTACGTTTTAAAAGCAGACGTGTGATACAGTGGCAAAACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACACGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGAAGCTTCAGATGCTTGCTGACCCATTTCCTTCTCTGCCTACATGTTACACTGTGTTACTAATGCACAGACATCTTTTAGAGACCAAGATACATGACCCATTGTGTTTTCATGTGATGCTGGAAGAAAATAGCATTGCGTCCTCTGTGTTGTCTATGTTGTCAATGAATCCAAATTAAAAACATGTCTCTACTTACATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475525.2 False 1090 mRNA 0.46 2 9686289 9689055
TU1180325 False 2544 lncRNA 0.41 2 9684834 9696461
TU1180323 False 1337 TUCP 0.46 2 9686029 9689042
TU1180320 False 1081 TUCP 0.46 2 9686285 9689042
TU1180321 False 1053 lncRNA 0.46 2 9686285 9689014
TU1180324 True 2172 TUCP 0.44 3 9686285 9689042

Neighbor

gene id symbol gene type direction distance location
LOC110536926 grp coding downstream 122289 9562103 ~ 9564000 (-)
hcn1 hcn1 coding downstream 479872 9018507 ~ 9206417 (-)
LOC110536920 NA coding downstream 664067 9015996 ~ 9022222 (-)
esm1 esm1 coding downstream 826222 8857631 ~ 8860067 (-)
arhgap24 arhgap24 coding downstream 876736 8594329 ~ 8809553 (-)
nedd4l nedd4l coding upstream 6027 9695082 ~ 9803536 (-)
dnajc21 dnajc21 coding upstream 187475 9876530 ~ 9887383 (-)
bxdc2 brix1 coding upstream 202548 9891603 ~ 9896872 (-)
rad1 rad1 coding upstream 207973 9897028 ~ 9899621 (-)
sema4d sema4d coding upstream 212054 9901109 ~ 9983793 (-)
G1035881 alpk2 non-coding downstream 18359 9657184 ~ 9667930 (-)
G1035736 NA non-coding downstream 118279 9567632 ~ 9568010 (-)
G1035717 NA non-coding downstream 138154 9533500 ~ 9548135 (-)
G1035723 NA non-coding downstream 144073 9541423 ~ 9542216 (-)
G1035690 NA non-coding downstream 197152 9488917 ~ 9489137 (-)
G1035907 NA non-coding upstream 26247 9715302 ~ 9715589 (-)
G1035913 NA non-coding upstream 42682 9731737 ~ 9732621 (-)
G1035914 NA non-coding upstream 43338 9732393 ~ 9734104 (-)
G1035928 NA non-coding upstream 76798 9765853 ~ 9766555 (-)
G1036655 NA non-coding upstream 144595 9833650 ~ 9834278 (-)
G1035160 NA other downstream 847455 8836256 ~ 8838834 (-)
G1034667 NA other downstream 1406423 8279339 ~ 8279866 (-)
G1034443 yo84 other downstream 1851711 7827880 ~ 7834578 (-)
LOC110536951 cr032 other upstream 1161147 10850171 ~ 10860150 (-)
G1037216 NA other upstream 1414029 11103084 ~ 11103448 (-)
G1037217 NA other upstream 1416880 11105935 ~ 11106320 (-)
LOC110536956 LOC106568459 other upstream 1524896 11212672 ~ 11231102 (-)
zgc:86839 cks2 coding upstream 292793 9989254 ~ 9995515 (-)

Expression


Co-expression Network