bxdc2 (brix1)


Basic Information

Item Value
gene id bxdc2
gene name brix1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9891603 ~ 9896872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622614.2
CTTACCGTTCTGAGCCTGCGTGTCAGAAATCAAAATGTCGGCGCTCAAGAGAAAACGTGGAGGAAAGGGTCCAGGTGGAAAAGCAAAGAAAGTGAAATTAGTAGAAAATGGAAATAAACCCCAAACTACAGAGATGGAGCAGAACAAGGAAATCACCGTCCCAGCACCCGTGTCAATGGGTAAGTGGAGAAACAAAGAGCGAGTTCTTGTATTCTCTTCAAGGGGCATCAACTTCAGAACACGACATTTGATGCAGGACCTCAGGACAATGATGCCACACTCGAAAGCAGACACAAAAATGGACAGAAAGGACAAACTCTTCGTCATAAACGAGGTGTGTGAAATCAAGAACTGCAACAAATGCTTATTCTTTGAAGCAAAGAAGAAGCAGGATCTCTATATGTGGGTTGCAAATGTTCCCCACGGACCATCTGCAAAGTTCTTGGTCCAGAATGtccacacacTCGCCGAACTCAAAATGACAGGGAACTGTCTGAAGGGATCCAGACCACTGCTGTCGTTTGATCCTCAATTTGACACGGAGCCTCATTATGCACTGCTGAAGGAGCTCTTTATCCAGACTTTTTCAACTCCCCAGTACCACCCCAGGAGCCAGCCCTTTGTGGACCATGTCTTCACATTCACCATAACAGACAACAGGATATGGTTCAGAAACTATCAGATCATTGAGGAAGATGCATCGATGGTAGAAATTGGACCTCGCTTCGTCCTGAACCTCATCAAAATATTCCAGGGGAGCTTCGGCGGCCCCACACTCTTTGAGAACCCACACTTCGAGTCTCCGAACGCGCACCGGCGTGTGATCCGCATGGCCACCGCCTCCAGGCTGAGGGAGAAACAGATGGTCAAGGAGCTCCAGAAGCTGAAGAGGGTGGAGAACAAGGAGGCGGTGACCAGGGACGTGACCGATGACGTGTTTGCCACGCCGGCTGAGGAGAGGCCAGTCCACATTGAGCTGGAGGCTCCTGCAGCTAAAGTAGTGAAGAAGAACAAACACAAGGCTTTCAAACGACAGAGGAAGCAGACGCGTTAGGCTAGAGACTGGTTGGTTTGCTGGGTCTTCTCGAAGTCATCTGGAAAGGCTAGAGACTGGTTGGTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGCTAGAGACTGGTTGCTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGGATTACATTGGTTCTTTCTCAATTTGTCTTTCCTCAATTCCATGTCTTTTTTAATTTTCAAAACTCAAAACGAGAAGTTTGAAGGGAGTGACCTAGAATCTTCTCCAGTGCGTTTTAGAAGGAATCGGGAAAAGACAAATTAGGACATTTGTTTGGCCGTAAACTGTGAGGATCAAGTCGACCATCAAGTCTGCAGCCTGTGAAGGGCCATCTCAGAATACGTTGTTTATGTGTTGAATGTTTTGTTTCAGCTGCACACAAAAAAGTACTAAAGCAACTTTGTAACTTCTGTTGTGCTCCAGCTTTTCTTACAGTTCTGAAATAAAGTCTCGGTTTTAGTGTTTA
>XM_021622615.2
CTTACCGTTCTGAGCCTGCGTGTCAGAAATCAAAATGTCGGCGCTCAAGAGAAAACGTGGAGGAAAGGGTCCAGGTGGAAAAGCAAAGAAAGTGAAATTAGTAGAAAATGGAAATAAACCCCAAACTACAGAGATGGAGCAGAACAAGGAAATCACCGTCCCAGCACCCGTGTCAATGGGTAAGTGGAGAAACAAAGAGCGAGTTCTTGTATTCTCTTCAAGGGGCATCAACTTCAGAACACGACATTTGATGCAGGACCTCAGGACAATGATGCCACACTCGAAAGCAGACACAAAAATGGACAGAAAGGACAAACTCTTCGTCATAAACGAGGTGTGTGAAATCAAGAACTGCAACAAATGCTTATTCTTTGAAGCAAAGAAGAAGCAGGATCTCTATATGTGGGTTGCAAATGTTCCCCACGGACCATCTGCAAAGTTCTTGGTCCAGAATGtccacacacTCGCCGAACTCAAAATGACAGGGAACTGTCTGAAGGGATCCAGACCACTGCTGTCGTTTGATCCTCAATTTGACACGGAGCCTCATTATGCACTGCTGAAGGAGCTCTTTATCCAGACTTTTTCAACTCCCCAGTACCACCCCAGGAGCCAGCCCTTTGTGGACCATGTCTTCACATTCACCATAACAGACAACAGGATATGGTTCAGAAACTATCAGATCATTGAGGAAGATGCATCGATGGTAGAAATTGGACCTCGCTTCGTCCTGAACCTCATCAAAATATTCCAGGGGAGCTTCGGCGGCCCCACACTCTTTGAGAACCCACACTTCGAGTCTCCGAACGCGCACCGGCGTGTGATCCGCATGGCCACCGCCTCCAGGCTGAGGGAGAAACAGATGGTCAAGGAGCTCCAGAAGCTGAAGAGGGTGGAGAACAAGGAGGCGGTGACCAGGGACGTGACCGATGACGTGTTTGCCACGCCGGCTGAGGAGAGGCCAGTCCACATTGAGCTGGAGGCTCCTGCAGCTAAAGTAGTGAAGAAGAACAAACACAAGGCTTTCAAACGACAGAGGAAGCAGACGCGTTAGGCTAGAGACTGGTTGGTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGCTAGAGACTGGTTGCTTTGTTGGGTCTTCTAGAAGTCATCTGGAAAGGGATTACATTGGTTCTTTCTCAATTTGTCTTTCCTCAATTCCATGTCTTTTTTAATTTTCAAAACTCAAAACGAGAAGTTTGAAGGGAGTGACCTAGAATCTTCTCCAGTGCGTTTTAGAAGGAATCGGGAAAAGACAAATTAGGACATTTGTTTGGCCGTAAACTGTGAGGATCAAGTCGACCATCAAGTCTGCAGCCTGTGAAGGGCCATCTCAGAATACGTTGTTTATGTGTTGAATGTTTTGTTTCAGCTGCACACAAAAAAGTACTAAAGCAACTTTGTAACTTCTGTTGTGCTCCAGCTTTTCTTACAGTTCTGAAATAAAGTCTCGGTTTTAGTGTTTA

Function

symbol description
brix1 Enables RNA binding activity. Predicted to be involved in ribosomal large subunit assembly. Located in chromosome and nucleolus.

NR:

description
ribosome biogenesis protein BRX1 homolog

GO: NA

KEGG:

id description
K14820 BRX1, BRIX1; ribosome biogenesis protein BRX1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622614.2 False 1544 mRNA 0.47 9 9891603 9896872
XM_021622615.2 True 1496 mRNA 0.46 10 9891603 9896872

Neighbor

gene id symbol gene type direction distance location
dnajc21 dnajc21 coding downstream 4220 9876530 ~ 9887383 (-)
nedd4l nedd4l coding downstream 88067 9695082 ~ 9803536 (-)
LOC110536932 NA coding downstream 202548 9684834 ~ 9696461 (-)
LOC110536926 grp coding downstream 327603 9562103 ~ 9564000 (-)
hcn1 hcn1 coding downstream 685186 9018507 ~ 9206417 (-)
rad1 rad1 coding upstream 156 9897028 ~ 9899621 (-)
sema4d sema4d coding upstream 4237 9901109 ~ 9983793 (-)
zgc:86839 cks2 coding upstream 92382 9989254 ~ 9995515 (-)
LOC110536942 s1pr3 coding upstream 187060 10083932 ~ 10090132 (-)
LOC110536943 LOC106568492 coding upstream 239146 10136018 ~ 10169675 (-)
G1036674 agxt2 non-coding downstream 15318 9869880 ~ 9876285 (-)
G1036670 NA non-coding downstream 26866 9864274 ~ 9864737 (-)
G1036664 NA non-coding downstream 36576 9846631 ~ 9855027 (-)
G1036657 prlr non-coding downstream 53827 9835310 ~ 9837776 (-)
G1036655 NA non-coding downstream 57325 9833650 ~ 9834278 (-)
G1036735 NA non-coding upstream 140889 10037761 ~ 10040455 (-)
G1036739 NA non-coding upstream 147956 10044828 ~ 10045288 (-)
G1036753 NA non-coding upstream 180136 10077008 ~ 10080380 (-)
G1036754 NA non-coding upstream 185315 10082187 ~ 10083031 (-)
G1035717 NA other downstream 343468 9533500 ~ 9548135 (-)
G1035160 NA other downstream 1052769 8836256 ~ 8838834 (-)
G1034667 NA other downstream 1611737 8279339 ~ 8279866 (-)
LOC110536951 cr032 other upstream 953330 10850171 ~ 10860150 (-)
G1037216 NA other upstream 1206212 11103084 ~ 11103448 (-)
G1037217 NA other upstream 1209063 11105935 ~ 11106320 (-)
LOC110536956 LOC106568459 other upstream 1317079 11212672 ~ 11231102 (-)

Expression


Co-expression Network