zgc:86839 (cks2)


Basic Information

Item Value
gene id zgc:86839
gene name cks2
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 9989254 ~ 9995515 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165235.2
AGGTTTGAATCGGTTAGCCAAACGTGTTGCAACGAAGCTAGCAGTGGGGACGTTCGTGGAATACTTTCTAACAAAGTGCAGTGGAATTGCATGTGTATACTGTCAAAGTTGTTTATTGGAAATATGTCACACAAACAAATCTACTACTCAGACAAATATAACGACGAACACTATGAATACAGGCATGTTGTTTTGCCGCGGGAGATGGTGAAACAAGTCCCCAAATCCCACCTGATGTCTGAGGATGAGTGGAGGCGAATGGGAGTGCAGCAGTCTCTTGGATGGGTGCACTATATGATCCATGAACCTGaGCCTCACATTCTCCTGTTTAGACGACCATTACCGAAGAACTGATCTGGAACGTTCCTTCCTGTCAACATTCCGTGGTATTCATTGAATACTCGCTCCCCTACAAGTTATATTGTCTGCTGTGCATGAAGCTGTATTTGTCTCAGCAACCAAGCTCAGTCGGATTGTACGGAGGATGTGAATGTTCTGTCACTGTGGCATTTAATGAATATCATACATCACCAATATGTTGCTACTAGTACTACACTAATACCAAAGTGCCTACGATGAATATCCACCCTTTGATCAAGTGTTGAAATAAAGTATTGAGTTACATGTTATTGACATAACATGTTGTTTTTCCTATCGCTTGAATATAATTGTTGTATAACCTTCCCAAACGGCTGCATGTGCTCACTTTTCTATGACTAATGATATGTACTGTGTTTTTCTATTTTCTAACTGAATGGATTTATAAGTAGGTGCACCAGATGGTATTGACTAGCTTTTTGTACATAAAAGTCAACTCTGATTGAAAGCTCAGTAAAGATGGTGTTTGCTTGTATACTTTACTTGTTCCGGGTTCTCCAAAGTACCTGTTTTCTATCTACTGTCCACTGACATGCAGCCAGCACGTGTGGCACGACGAGTAGCCAGCCAGGCCACTTTCGGCGGCCAGtcaaacatgtttattttttcgGCTCGTGTATTTGTGATCATTAACTGTTGATAGAGCCGTACAGCCTCTAAACTGCACCGCTACTGAACCACTGAGGATATCATCAGTCTGTAATACAAACTTATCATTTGTGATTTGTCTACACCACATACACAATGGTATGAAAGAAGTTTGTCACTCTTGGTTGTTTGGCTGTTGGCTCTTTTTTTGAATGTCATTACTTTTGATgagaataaatatattttgaaattG
>TU1181362
GCCAAACGTGTTGCAACGAAGCTAGCAGTGGGGACGTTCGTGGAATACTTTCTAACAAAGTGCAGTGGAATTGCATGTGTATACTGTCAAAGTTGTTTATTGGAAATATGTCACACAAACAAATCTACTACTCAGACAAATATAACGACGAACACTATGAATACAGGCATGTTGTTTTGCCGCGGGAGATGGTGAAACAAGTCCCCAAATCCCACCTGATGTCTGAGGATGAGTGGAGGCGAATGGGAGTGCAGCAGTCTCTTGGATGGGTGCACTATATGATCCATGAACCTGaGCCTCACATTCTCCTGTTTAGACGACCATTACCGAAGAACTGATCTGGAACGTTCCTTCCTGTCAACATTCCGTGGTATTCATTGAATACTCGCTCCCCTACAAGTTATATTGTCTGCTGTGCATGAAGCTGTATTTGTCTCAGCAACCAAGCTCAGTCGGATTGTACGGAGGATGTGAATGTTCTGTCACTGTGGCATTTAATGAATATCATACATCACCAATATGTTGCTACTAGTACTACACTAATACCAAAGTGCCTACGATGAATATCCACCCTTTGATCAAGTGTTGAAATAAAGTATTGAGTTACATGTTATTGACATAACATGTTGTTTTTCCTATCGCTTGAATATAATTGTTGTATAACCTTCCCAAACGGCTGCATGTGCTCACTTTTCTATGACTAATGATATGTACTGTGTTTTTCTATTTTCTAACTGAATGGATTTATAAGTAGGTGCACCAGATGGTATTGACTAGCTTTTTGTACATAAAAGTCAACTCTGATTGAAAGCTCAGTAAAGATGGTGTTTGCTTGTATACTTTACTTGTTCCGGGTTCTCCAAAGTACCTGTTTTCTATCTACTGTCCACTGACATGCAGCCAGCACGTGTGGCACGACGAGTAGCCAGCCAGGCCACTTTCGGCGGCCAGtcaaacatgtttattttttcgGCTCGTGTATTTGTGATCATTAACTGTTGATAGAGCCGTACAGCCTCTAAACTGCACCGCTACTGAACCACTGAGGATATCATCAGTCTGTAATACAAACTTATCATTTGTGATTTGTCTACACCACATACACAATGGTATGAAAGAAGTTTGTCACTCTTGGTTGTTTGGCTGTTGG

Function

symbol description
cks2 Predicted to enable several functions, including cyclin-dependent protein serine/threonine kinase activator activity; histone binding activity; and ubiquitin binding activity. Predicted to be involved in regulation of mitotic cell cycle. Predicted to act upstream of or within cell division. Predicted to be part of SCF ubiquitin ligase complex and cyclin-dependent protein kinase holoenzyme complex. Orthologous to human CKS2 (CDC28 protein kinase regulatory subunit 2).

NR:

description
PREDICTED: cyclin-dependent kinases regulatory subunit 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165235.2 False 1219 mRNA 0.40 3 9989254 9995515
TU1181362 True 1150 lncRNA 0.41 3 9989307 9995499

Neighbor

gene id symbol gene type direction distance location
sema4d sema4d coding downstream 5461 9901109 ~ 9983793 (-)
rad1 rad1 coding downstream 89633 9897028 ~ 9899621 (-)
bxdc2 brix1 coding downstream 92382 9891603 ~ 9896872 (-)
dnajc21 dnajc21 coding downstream 101871 9876530 ~ 9887383 (-)
nedd4l nedd4l coding downstream 185718 9695082 ~ 9803536 (-)
LOC110536942 s1pr3 coding upstream 88417 10083932 ~ 10090132 (-)
LOC110536943 LOC106568492 coding upstream 140503 10136018 ~ 10169675 (-)
smad7 LOC106568470 coding upstream 581289 10576804 ~ 10623185 (-)
dym LOC106568469 coding upstream 641105 10636620 ~ 10848489 (-)
LOC110536951 cr032 coding upstream 854656 10850171 ~ 10860150 (-)
G1036674 agxt2 non-coding downstream 112969 9869880 ~ 9876285 (-)
G1036670 NA non-coding downstream 124517 9864274 ~ 9864737 (-)
G1036664 NA non-coding downstream 134227 9846631 ~ 9855027 (-)
G1036657 prlr non-coding downstream 151478 9835310 ~ 9837776 (-)
G1036655 NA non-coding downstream 154976 9833650 ~ 9834278 (-)
G1036735 NA non-coding upstream 42246 10037761 ~ 10040455 (-)
G1036739 NA non-coding upstream 49313 10044828 ~ 10045288 (-)
G1036753 NA non-coding upstream 81493 10077008 ~ 10080380 (-)
G1036754 NA non-coding upstream 86672 10082187 ~ 10083031 (-)
G1036785 NA non-coding upstream 127143 10122658 ~ 10123398 (-)
LOC110536932 NA other downstream 300212 9684834 ~ 9696461 (-)
G1035717 NA other downstream 441119 9533500 ~ 9548135 (-)
hcn1 hcn1 other downstream 946574 9018507 ~ 9206417 (-)
G1035160 NA other downstream 1150420 8836256 ~ 8838834 (-)
G1037216 NA other upstream 1107569 11103084 ~ 11103448 (-)
G1037217 NA other upstream 1110420 11105935 ~ 11106320 (-)
LOC110536956 LOC106568459 other upstream 1218436 11212672 ~ 11231102 (-)
G1038258 NA other upstream 1610836 11606351 ~ 11615943 (-)

Expression


Co-expression Network