LOC110536943 (LOC106568492)



Basic Information


Item Value
gene id LOC110536943
gene name LOC106568492
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10136018 ~ 10169675 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021622625.2
TATACCCTAAACCCTTACTGCTTCACCCCTCTCCTTCCATAATGCAATTCactctaacaaaacaacaaattcATTTTGTCTGACCTAAATCAGAGGGTGTCTGAGCCATGAGTTTATAACACACTGTGCTTAACTTGTGTTGTGGAGGAGGGCTGGGGTATTATTATCTTTCAGCTACCCACCCTGCTATAAAAACTAGTGGTGCAACATCTCCACATAGCAGTAATGctgctctgctctccctccctactGTGAATCTGACAAGCCTGCCTTCCCTGCCTGCCGTCTCTCAACTCCTCTGTTGCTCTGCTCACCAGCCTGTTTACGTCTGCcagggacacacacacctctctccgcTCCGGTCCGGTCTGGCGGTCCACTGTTAACCTCCTTTAGCTGCTACTTGTCTTTGTATTTGGAAGTGTTGGATATTTCCTGGTTTTTGTGAATGGGCGGCCGATGCGAGGTGGCTGTGACTGTGAATGGACTGACTGTGTCAGCTCTGGGTACACTATTCTGAAGAGGCAATGTGACAGGTCTCTGGACACCACTGGTAGACTCTGAATTATAAACAAACGGAAAGAAAGGAATTAAGAAGATCAGTGAGAGGAGAAGGATGGGCCACAGTGAAGATGACCTGATTGGGATTCCGTTCCCCAACCACAGCAGTGATGTCCTGTGCTGCCTCAACGAACAGCGGCGCGCCGGGTTGCTCTGTGACGTGGTGCTCATCGTACGCGACCAGGAGTACCAGACCCACCGCTCGGTCCTCGCCGCCTGCAGCCTGTACTTCAAGAAGCTCTTCACCGTGGCCTCGGACGGAAGGGACAAGCACAGTGTGTATGAGATAGACTTCGTGGCCCCGGAGTCACTGACGGCCATCTTGGAGTTCGCCTACACATCTACGCTAACGGTGACGGCGTCCAACGTGAAAGAAATTCTTGGAGCGGCTCAGATGTTGGAGATCCCCTGCATCGTCACCGTCTGTCTGGAGATTATGGACTCTggcaagggaggaggaggagagggagatgaggaggaagacgaagaggaggaggaacaggagggggaggaggaggaggaagagtcgAGGAAGGACGAGCAGGAGGTTCATGAGGAGGACAACGCCAGTGAGTGGTCAACGAGGTCGTCAGAGAGTCAGGACCAGGCCGAGTCGGAGAGAGGAGCACCACCCAGTACCTCTCAGTACCAGCACCAGTATGAGCTGCAGAGGAACAGGAAGTGCACAGACAAAGACTCTCAGTGTGAGAAACCCAGCCCGGAGCATGAGCGCATGGAGAGCCGAGCCCTCAAGGACTTTTCCATTGAGTCTCTGCTACAGGAAGGGCTGTACCCTAAACTGCCATCAGTCCTGGACAGGAGGGACAACTTTTCCCCTCTGCTCCCTGGCTTCTACCCTCCCATGTGGGCTGCAGAGTTCCCAGGATTCCCCCCGCAGGTCCTAGACCCCAGCCACCACGCCCAGACCCCGACCCTCCACCGTTCCTCCCACCCTTCTCAACTGGACAACCGACCCTTAGACCTGGCCGTGAAGAGAGAGGTCGTCAAGGAGGAGCTGAAGGAGGAAGTCCCTCCCAGCATGCTCCACAGTGACTTCCTGAAAGACTTAATGACCTCCGGCCTGGGAGTGGGGGTGGTACGGTCCGAGGGGCCTCACCTCCACCCGGGTCAGATAAAGCAGGAGGAAGACTTCCGCTCATACCTGAGCTTCCTGAGTGCATCAAGCCACCTGGGGGCACTGTTCCCTCCCTggcagatggaggaggagaggaagatgaagcCCAAAGCATCCCAGCAGTGTCCCATCTGTAACAAGGTGATCCAGGGAGCAGGGAAACTACCCAGACACATgaggactcacacaggagagaaaccatacaTGTGCACCATCTGTGAGGTGCGCTTCACCAGGCAAGACAAGCTGAAGATCCACATGCGGAAGCACACAGGAGAGCGGCCCTACGTCTGCCTCCACTGCAACTCTAAGTTTGTCCACAACTACGACCTGAAGAACCACCTGCGTATCCACACAGGGGTGCGGCCCTACCAGTGTGAGCACTGCTACAAGAGCTTCACACGCTCAGACCACCTGCACCGACACATCAAGAGGCAGAGCTGCCGCGTCTCACGCCCTCGACGAGGCCGCAAGCCCGCCGCCTGGCGCTCAGCCAACAACTTCCTGCAGGGCCCTCCTGCCTCGGCCAATCACCACGAGGATGGCAAGGGCGGCTGCCGGCTTCTGCCCTCCTCCCATAGAGGCGTTAGAGGTCACGGTCTGGgcctaggggagagagagagacaggccctGGGTGGTAAGGGCCTGGGCTATAAGGACTTGGAcagtgacagcagagagagccGGGAGGGCAGGGAGGCCAGAGAGGGCCGGGAGGCTAGAGAGGGCCGGGAGGGCCGGGAGGCTAGAGAGGTTCGGCATCACCAGTCAGACAGGAAGCATGTGGTTGACAAGGTGgagctggagagacagaggggcgtgTTCACCTTTGCCCTGGCGGGGCCTGGGGGGGAAGTCCTTACCCACCCTCCATTTTACACCCCGACCCCTGACCCCTGGACCATTAGACTGGAGAACCACGCCTCTCCCATCCCTGAGCCGACTAACTGACACAGATTAAAGATGTTAGAACAGAGACAGTGCCGGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGACACTTCCAACAGATAACTGATGCTTCATCTCAGACTTCTAAGAACAATACAGAACAGAAAGTTCTCTGCCTGATAGATGTTCCACCTGCTGTTTAGAGATACAAGGATATTAGGCTGAGGAGATGAGAGTTTGAGGGGAGTGATGTCTGGGAATATAAATGTATAGAAAACAGGGGAATTACTGGAAAACAGTTGATTTTAGACATATCAGATCAAAATCACAAGGatttttataaaaacatttaatttgTAGAAATAAAACTGGATGAATAGATGTTGTATGTTgcaaaagtacacacacacaaaataatacTCTCAGGACATTATATAATTGTTTATCTTTGGATTGTAATTGTTTATCTTTGGATTCACTACAATCAATGTAAATGTGTAATTCATAGTATACTTAATATTAGCAATAGGTTGTTTCTCAAATTCACAGTCTACAAAAAAATAAACCGATAATATCAGCCGTTATTTATAAACGACAAACAGATTCCAAATCCATCCAAAGTTGTAGACCAACATCAGTTCTAATGGGCAGGGTAGTGTAAGCCAACGAAGAACATTCAAAACCAGGACAAATTATTCACTTGacttaaaaacaaatatatataatatagatcCAAAACTTGTTTTCACCCTTGTATTGCCTTGTTCTCAGGTTTTGTAAATATCTACAAAATGTTTTAAAGATTTTGACCATAGTAATATtgaatattgttgtattatatttttttttatcatcgATAACCCATCCAAAGGTGTGCCGTTTGATATTTCACACATTTTTCACAAGCCTTGTGTTACATATGATATCTGTGTTTCTTCTAAAGACCAAGACGTGTACGATTCGTTAGACTGATATACACTGAATTATTGCTTTAGCTATGCCCTGCTCCCGATTGGAGCGTTAAGACCTTGAAAGAGGATTCTACCCTATGTTCATATAGTGCTCTTAACTGATCTATGTACAAATATTGCTATTCAGAATTGTTTGAATTGAAATGAAATGGGAAACTATTTTCTTGCTATTTATGCATATTTAAATGAGCCTTGGCTATATTTAGCAAATATGTTGTTTTATAAAGACACTAAAT
>XM_021622624.2
CCCCACACTTCCTAAATCAGTGACACACCTTCAGAGCAAAGTCGagctcttctgtctctgtctacctctctttgtttctctctcactttcgcATGCCTGCCACAGAGGACAGGACTCTGCTTCCTGACAGACAGGGACTGAGAGTAGCGTGAGAAGAAGAAACTGAAATCCAAAACGCCTATCTGCTAAAAGATCAGTGAGAGGAGAAGGATGGGCCACAGTGAAGATGACCTGATTGGGATTCCGTTCCCCAACCACAGCAGTGATGTCCTGTGCTGCCTCAACGAACAGCGGCGCGCCGGGTTGCTCTGTGACGTGGTGCTCATCGTACGCGACCAGGAGTACCAGACCCACCGCTCGGTCCTCGCCGCCTGCAGCCTGTACTTCAAGAAGCTCTTCACCGTGGCCTCGGACGGAAGGGACAAGCACAGTGTGTATGAGATAGACTTCGTGGCCCCGGAGTCACTGACGGCCATCTTGGAGTTCGCCTACACATCTACGCTAACGGTGACGGCGTCCAACGTGAAAGAAATTCTTGGAGCGGCTCAGATGTTGGAGATCCCCTGCATCGTCACCGTCTGTCTGGAGATTATGGACTCTggcaagggaggaggaggagagggagatgaggaggaagacgaagaggaggaggaacaggagggggaggaggaggaggaagagtcgAGGAAGGACGAGCAGGAGGTTCATGAGGAGGACAACGCCAGTGAGTGGTCAACGAGGTCGTCAGAGAGTCAGGACCAGGCCGAGTCGGAGAGAGGAGCACCACCCAGTACCTCTCAGTACCAGCACCAGTATGAGCTGCAGAGGAACAGGAAGTGCACAGACAAAGACTCTCAGTGTGAGAAACCCAGCCCGGAGCATGAGCGCATGGAGAGCCGAGCCCTCAAGGACTTTTCCATTGAGTCTCTGCTACAGGAAGGGCTGTACCCTAAACTGCCATCAGTCCTGGACAGGAGGGACAACTTTTCCCCTCTGCTCCCTGGCTTCTACCCTCCCATGTGGGCTGCAGAGTTCCCAGGATTCCCCCCGCAGGTCCTAGACCCCAGCCACCACGCCCAGACCCCGACCCTCCACCGTTCCTCCCACCCTTCTCAACTGGACAACCGACCCTTAGACCTGGCCGTGAAGAGAGAGGTCGTCAAGGAGGAGCTGAAGGAGGAAGTCCCTCCCAGCATGCTCCACAGTGACTTCCTGAAAGACTTAATGACCTCCGGCCTGGGAGTGGGGGTGGTACGGTCCGAGGGGCCTCACCTCCACCCGGGTCAGATAAAGCAGGAGGAAGACTTCCGCTCATACCTGAGCTTCCTGAGTGCATCAAGCCACCTGGGGGCACTGTTCCCTCCCTggcagatggaggaggagaggaagatgaagcCCAAAGCATCCCAGCAGTGTCCCATCTGTAACAAGGTGATCCAGGGAGCAGGGAAACTACCCAGACACATgaggactcacacaggagagaaaccatacaTGTGCACCATCTGTGAGGTGCGCTTCACCAGGCAAGACAAGCTGAAGATCCACATGCGGAAGCACACAGGAGAGCGGCCCTACGTCTGCCTCCACTGCAACTCTAAGTTTGTCCACAACTACGACCTGAAGAACCACCTGCGTATCCACACAGGGGTGCGGCCCTACCAGTGTGAGCACTGCTACAAGAGCTTCACACGCTCAGACCACCTGCACCGACACATCAAGAGGCAGAGCTGCCGCGTCTCACGCCCTCGACGAGGCCGCAAGCCCGCCGCCTGGCGCTCAGCCAACAACTTCCTGCAGGGCCCTCCTGCCTCGGCCAATCACCACGAGGATGGCAAGGGCGGCTGCCGGCTTCTGCCCTCCTCCCATAGAGGCGTTAGAGGTCACGGTCTGGgcctaggggagagagagagacaggccctGGGTGGTAAGGGCCTGGGCTATAAGGACTTGGAcagtgacagcagagagagccGGGAGGGCAGGGAGGCCAGAGAGGGCCGGGAGGCTAGAGAGGGCCGGGAGGGCCGGGAGGCTAGAGAGGTTCGGCATCACCAGTCAGACAGGAAGCATGTGGTTGACAAGGTGgagctggagagacagaggggcgtgTTCACCTTTGCCCTGGCGGGGCCTGGGGGGGAAGTCCTTACCCACCCTCCATTTTACACCCCGACCCCTGACCCCTGGACCATTAGACTGGAGAACCACGCCTCTCCCATCCCTGAGCCGACTAACTGACACAGATTAAAGATGTTAGAACAGAGACAGTGCCGGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGACACTTCCAACAGATAACTGATGCTTCATCTCAGACTTCTAAGAACAATACAGAACAGAAAGTTCTCTGCCTGATAGATGTTCCACCTGCTGTTTAGAGATACAAGGATATTAGGCTGAGGAGATGAGAGTTTGAGGGGAGTGATGTCTGGGAATATAAATGTATAGAAAACAGGGGAATTACTGGAAAACAGTTGATTTTAGACATATCAGATCAAAATCACAAGGatttttataaaaacatttaatttgTAGAAATAAAACTGGATGAATAGATGTTGTATGTTgcaaaagtacacacacacaaaataatacTCTCAGGACATTATATAATTGTTTATCTTTGGATTGTAATTGTTTATCTTTGGATTCACTACAATCAATGTAAATGTGTAATTCATAGTATACTTAATATTAGCAATAGGTTGTTTCTCAAATTCACAGTCTACAAAAAAATAAACCGATAATATCAGCCGTTATTTATAAACGACAAACAGATTCCAAATCCATCCAAAGTTGTAGACCAACATCAGTTCTAATGGGCAGGGTAGTGTAAGCCAACGAAGAACATTCAAAACCAGGACAAATTATTCACTTGacttaaaaacaaatatatataatatagatcCAAAACTTGTTTTCACCCTTGTATTGCCTTGTTCTCAGGTTTTGTAAATATCTACAAAATGTTTTAAAGATTTTGACCATAGTAATATtgaatattgttgtattatatttttttttatcatcgATAACCCATCCAAAGGTGTGCCGTTTGATATTTCACACATTTTTCACAAGCCTTGTGTTACATATGATATCTGTGTTTCTTCTAAAGACCAAGACGTGTACGATTCGTTAGACTGATATACACTGAATTATTGCTTTAGCTATGCCCTGCTCCCGATTGGAGCGTTAAGACCTTGAAAGAGGATTCTACCCTATGTTCATATAGTGCTCTTAACTGATCTATGTACAAATATTGCTATTCAGAATTGTTTGAATTGAAATGAAATGGGAAACTATTTTCTTGCTATTTATGCATATTTAAATGAGCCTTGGCTATATTTAGCAAATATGTTGTTTTATAAAGACACTAAAT
>TU1181452
CTGGCGGGGCCTGGGGGGGAAGTCCTTACCCACCCTCCATTTTACACCCCGACCCCTGACCCCTGGACCATTAGACTGGAGAACCACGCCTCTCCCATCCCTGAGCCGACTAACTGACACAGATTAAAGATGTTAGAACAGAGACAGTGCCGGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGAcacctgaacagagagagagccgGCCAACTGACACTTCCAACAGATAACTGATGCTTCATCTCAGACTTCTAAGAACAATACAGAACAGAAAGTTCTCTGCCTGATAGATGTTCCACCTGCTGTTTAGAGATACAAGGATATTAGGCTGAGGAGATGAGAGTTTGAGGGGAGTGATGTCTGGGAATATAAATGTATAGAAAACAGGGGAATTACTGGAAAACAGTTGATTTTAGACATATCAGATCAAAATCACAAGGatttttataaaaacatttaatttgTAGAAATAAAACTGGATGAATAGATGTTGTATGTTgcaaaagtacacacacacaaaataatacTCTCAGGACATTATATAATTGTTTATCTTTGGATTGTAATTGTTTATCTTTGGATTCACTACAATCAATGTAAATGTGTAATTCATAGTATACTTAATATTAGCAATAGGTTGTTTCTCAAATTCACAGTCTACAAAAAAATAAACCGATAATATCAGCCGTTATTTATAAACGACAAACAGATTCCAAATCCATCCAAAGTTGTAGACCAACATCAGTTCTAATGGGCAGGGTAGTGTAAGCCAACGAAGAACATTCAAAACCAGGACAAATTATTCACTTGacttaaaaacaaatatatataatatagatcCAAAACTTGTTTTCACCCTTGTATTGCCTTGTTCTCAGGTTTTGTAAATATCTACAAAATGTTTTAAAGATTTTGACCATAGTAATATtgaatattgttgtattatatttttttttatcatcgATAACCCATCCAAAGGTGTGCCGTTTGATATTTCACACATTTTTCACAAGCCTTGTGTTACATATGATATCTGTGTTTCTTCTAAAGACCAAGACGTGTACGATTCGTTAGACTGATATACACTGAATTATTGCTTTAGCTATGCCCTG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021622625.2 False 3977 mRNA 0.50 3 10136018 10150360
XM_021622624.2 False 3571 mRNA 0.50 3 10136018 10169675
TU1181452 True 1152 lncRNA 0.38 2 10136220 10137464

Neighbor


gene id symbol gene type direction distance location
LOC110536942 s1pr3 coding downstream 45886 10083932 ~ 10090132 (-)
zgc:86839 cks2 coding downstream 140503 9989254 ~ 9995515 (-)
sema4d sema4d coding downstream 152225 9901109 ~ 9983793 (-)
rad1 rad1 coding downstream 236397 9897028 ~ 9899621 (-)
bxdc2 brix1 coding downstream 239146 9891603 ~ 9896872 (-)
smad7 LOC106568470 coding upstream 407129 10576804 ~ 10623185 (-)
dym LOC106568469 coding upstream 466945 10636620 ~ 10848489 (-)
LOC110536951 cr032 coding upstream 680496 10850171 ~ 10860150 (-)
LOC110536953 LOC106561351 coding upstream 788768 10958443 ~ 10961023 (-)
LOC110536954 LOC106568457 coding upstream 800265 10969940 ~ 10991575 (-)
G1036785 NA non-coding downstream 12620 10122658 ~ 10123398 (-)
G1036754 NA non-coding downstream 52987 10082187 ~ 10083031 (-)
G1036753 NA non-coding downstream 55638 10077008 ~ 10080380 (-)
G1036739 NA non-coding downstream 90730 10044828 ~ 10045288 (-)
G1036735 NA non-coding downstream 95563 10037761 ~ 10040455 (-)
G1036830 NA non-coding upstream 36391 10206066 ~ 10206341 (-)
G1036907 NA non-coding upstream 177063 10346738 ~ 10351625 (-)
G1036908 NA non-coding upstream 178039 10347714 ~ 10350550 (-)
G1036921 NA non-coding upstream 204574 10374249 ~ 10374741 (-)
G1036934 NA non-coding upstream 237979 10407654 ~ 10409848 (-)
LOC110536932 NA other downstream 446976 9684834 ~ 9696461 (-)
G1035717 NA other downstream 587883 9533500 ~ 9548135 (-)
hcn1 hcn1 other downstream 1093338 9018507 ~ 9206417 (-)
G1035160 NA other downstream 1297184 8836256 ~ 8838834 (-)
G1037216 NA other upstream 933409 11103084 ~ 11103448 (-)
G1037217 NA other upstream 936260 11105935 ~ 11106320 (-)
LOC110536956 LOC106568459 other upstream 1044276 11212672 ~ 11231102 (-)
G1038258 NA other upstream 1436676 11606351 ~ 11615943 (-)

Expression



Co-expression Network