Gene
RNA
| Item | Value |
|---|---|
| gene id | ctif |
| gene name | ctif |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 10237527 ~ 10430266 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| ctif | Predicted to enable RNA binding activity. Orthologous to human CTIF (cap binding complex dependent translation initiation factor). |
| description |
|---|
| PREDICTED: CBP80/20-dependent translation initiation factor isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036937075.1 | False | 7603 | mRNA | 0.52 | 15 | 10237527 | 10430266 |
| TU1180698 | False | 1113 | TUCP | 0.54 | 2 | 10424366 | 10426813 |
| TU1180710 | False | 3788 | TUCP | 0.47 | 4 | 10424366 | 10430179 |
| TU1180701 | False | 2476 | lncRNA | 0.42 | 2 | 10426881 | 10430179 |
| TU1180702 | False | 2546 | lncRNA | 0.43 | 3 | 10426881 | 10430179 |
| TU1180703 | False | 2252 | lncRNA | 0.42 | 3 | 10426911 | 10430179 |
| TU1180704 | False | 2458 | lncRNA | 0.42 | 4 | 10426911 | 10430179 |
| TU1180707 | False | 2829 | lncRNA | 0.43 | 5 | 10426911 | 10430179 |
| TU1180708 | False | 2887 | lncRNA | 0.43 | 4 | 10426911 | 10430179 |
| TU1180696 | True | 527 | lncRNA | 0.41 | 2 | 10429709 | 10430258 |
10,200,000
10,220,000
10,240,000
10,260,000
10,280,000
10,300,000
10,320,000
10,340,000
10,360,000
10,380,000
10,400,000
10,420,000
10,440,000
10,460,000
10,480,000
10,500,000
10,520,000
10,540,000
10,560,000
10,580,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| shc3 | shc3 | coding | upstream | 157141 | 10020244 ~ 10080386 (+) |
| agxt2 | agxt2 | coding | upstream | 361232 | 9846969 ~ 9876295 (+) |
| prlra | prlr | coding | upstream | 395865 | 9809972 ~ 9841662 (+) |
| alpk2 | alpk2 | coding | upstream | 553540 | 9657273 ~ 9683987 (+) |
| LOC110536930 | LOC106568494 | coding | upstream | 603570 | 9624926 ~ 9633957 (+) |
| LOC110536952 | LOC106568455 | coding | downstream | 441048 | 10871314 ~ 10925313 (+) |
| LOC110536781 | NA | coding | downstream | 501528 | 10931794 ~ 10942708 (+) |
| LOC110536957 | NA | coding | downstream | 806737 | 11237003 ~ 11239732 (+) |
| LOC118937623 | NA | coding | downstream | 1011133 | 11441213 ~ 11456812 (+) |
| LOC110539116 | NA | coding | downstream | 1080892 | 11511158 ~ 11512562 (+) |
| G1036157 | LOC106568492 | non-coding | upstream | 97560 | 10138515 ~ 10139967 (+) |
| G1036156 | LOC106568492 | non-coding | upstream | 99476 | 10136009 ~ 10138051 (+) |
| G1036033 | NA | non-coding | upstream | 313497 | 9923404 ~ 9924030 (+) |
| G1036029 | sema4d | non-coding | upstream | 320947 | 9916017 ~ 9916580 (+) |
| G1036320 | NA | non-coding | downstream | 44617 | 10474883 ~ 10477600 (+) |
| G1036334 | NA | non-coding | downstream | 91252 | 10521518 ~ 10538140 (+) |
| G1036348 | NA | non-coding | downstream | 134877 | 10565143 ~ 10566030 (+) |
| G1036383 | NA | non-coding | downstream | 204807 | 10635073 ~ 10802041 (+) |
| G1036409 | NA | non-coding | downstream | 251556 | 10681822 ~ 10686221 (+) |
| G1036179 | NA | other | upstream | 51114 | 10185716 ~ 10186413 (+) |
| G1035997 | sema4d | other | upstream | 327154 | 9907145 ~ 9910373 (+) |
| G1035825 | nedd4l | other | upstream | 472538 | 9763247 ~ 9764989 (+) |
| cplx4a | cplx4 | other | upstream | 689311 | 9533126 ~ 9548216 (+) |
| G1035405 | NA | other | upstream | 985949 | 9250921 ~ 9251578 (+) |
| G1036319 | NA | other | downstream | 40049 | 10470315 ~ 10473073 (+) |
| G1036562 | LOC106568456 | other | downstream | 528142 | 10958408 ~ 10961123 (+) |
| G1037472 | NA | other | downstream | 1021740 | 11452006 ~ 11455196 (+) |
| LOC110536961 | LOC106568434 | other | downstream | 1138385 | 11568368 ~ 11602303 (+) |
| G1039147 | NA | other | downstream | 2694658 | 13124924 ~ 13126167 (+) |
| G1036294 | NA | non-coding | upstream | 16960 | 10406940 ~ 10409921 (+) |
| G1036240 | NA | non-coding | upstream | 58126 | 10311429 ~ 10368755 (+) |
| G1036266 | NA | non-coding | upstream | 75116 | 10349106 ~ 10351765 (+) |
| G1036239 | NA | non-coding | upstream | 118698 | 10307389 ~ 10308183 (+) |
| G1036232 | NA | non-coding | upstream | 124846 | 10295682 ~ 10302035 (+) |
