smad7 (LOC106568470)


Basic Information

Item Value
gene id smad7
gene name LOC106568470
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 10576804 ~ 10623185 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936879.1
ATGTTTAGGACCAAACGAACTGGGCTCGTCCGGCGACTCTGGAGGAGCCGTGCGCCGGTCGAGGGCGACGGGGATGCGGATACACGAACGCATGGATCCGGGGGTTGCTGTATGGGTAAATCGACGAAGGTTGCCGGAAAAACTAGCGCCGGAACGGATGCTGAATTGAAATCCCTGACCCACTCGATACTGAAACAAATAAAAGAGAAACAATTAGAGGGGCTCTTGCAAGCGGTCGAGTCAAAGGGGGGTGCGCGGAGCCCCTGCCTGCTCCTACCCAGCAAAGTGGACACCAAACTGGGTCAGCAGTCTTATTCCCTCCCCTTGCTGCTCTATAAAGTGTTTCGGTGGCCGGACCTCATGGATTGCTCGGAATTAAAAAGGCTGTCTTGCTGTGAATCCTATGGGGAAATTAACCCAGAACTCGTTTGCTGCAATCCGCACCACATGAGCAGGCTTTGTGAACTCGagtccccccctcctccttattCCCGATATCCAATGGACTTTCTTAAACCACCCGATTCTCCAGACTCGGGGCCTTCATCCACAGAGACTGGAGGAACTACCTACTCGGCCCCTGTGGGGCTCTCAGATCCCCAGGCTCTCCAGGAGTCGGGCGACAGATCCCACTGGTGCGTGGTCGCGTACTGGGAGGAAAAGACCCGTGTGGGGCGCCTCTACTCGGTCCAGGAGCCTTCCCTGGACATCTTCTACGACCTACCTCAGGGGAACGGCTTCTGCCTGGGCCAGCTCAGCTCCGACAACAAGAGCCCGCTGGCTCAGATGGTGCGGACCAAGATCGGCTACGGCATCCAGCTGAGTCGCGAGCCCGACGGGGTGTGGGTGTACAACCGCAGCTGCTACCCCATCTTTATCAAGTCGGCCACACTGGACAATCCCGACTCGCGGACTTTACTGGTGCATAAAGTGTTCCCCGGATTCTCCATTAAGGCCTTTGACTTTGAGAAGGCAGACAGCCTGCAGAGGCCTAACGATCACGAGTTCACACAGCAGCCGAGGACTGGGTTTACTGTACAGATCAGCTTTGTGAAGGGCTGGGGTCAGTGCTACACAAGACAGTTTATTAGTAGCTGCCCTTGTTGGCTGGAGGTCATATTCAACAACCAATAAAAACGGATTACCTTTGGATaaccttcctcccccctcttcttcctcGTTCTCCTCATTCGAGGACCAGGTGGGAACGGAGGTCAGAGACTAGTCCCTCACCTTTCCTTTTTTTTCCCAGAAGACAGTGCTTCAAAAAGGAAGATGTTTAAAGAAGAGACAAACAAAACCCAATAAACTTGTTAAATATGACAAATGACTCAAAGATTTAATTAAAAGTGAAATTAAAAGcgaaaatgtattttatgttatatatataaatatattattacTTGTAAATATGAAGACGTTTTATATGCATCATTATTTATGTATTGTGCAATGTGTTgatgagaaaaataaaataagatgCACTTTGCTTAATATAAATACAAACAAAGAAATGCCAAAATAAATAAGAGAAAT

Function

NR:

description
mothers against decapentaplegic homolog 7-like

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19631 SMAD7; mothers against decapentaplegic homolog 7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936879.1 True 1536 mRNA 0.49 4 10576804 10623185

Neighbor

gene id symbol gene type direction distance location
LOC110536943 LOC106568492 coding downstream 407129 10136018 ~ 10169675 (-)
LOC110536942 s1pr3 coding downstream 486672 10083932 ~ 10090132 (-)
zgc:86839 cks2 coding downstream 581289 9989254 ~ 9995515 (-)
sema4d sema4d coding downstream 593011 9901109 ~ 9983793 (-)
rad1 rad1 coding downstream 677183 9897028 ~ 9899621 (-)
dym LOC106568469 coding upstream 13435 10636620 ~ 10848489 (-)
LOC110536951 cr032 coding upstream 226986 10850171 ~ 10860150 (-)
LOC110536953 LOC106561351 coding upstream 335258 10958443 ~ 10961023 (-)
LOC110536954 LOC106568457 coding upstream 346755 10969940 ~ 10991575 (-)
LOC110536955 LOC106568458 coding upstream 423463 11046648 ~ 11051785 (-)
G1036995 NA non-coding downstream 5075 10569362 ~ 10571729 (-)
G1036986 NA non-coding downstream 29067 10547294 ~ 10547737 (-)
G1036959 NA non-coding downstream 107591 10465177 ~ 10469213 (-)
G1036958 NA non-coding downstream 111725 10464776 ~ 10465079 (-)
G1036946 NA non-coding downstream 151609 10424792 ~ 10425195 (-)
G1037037 NA non-coding upstream 35305 10658490 ~ 10659160 (-)
G1037058 NA non-coding upstream 91399 10714584 ~ 10715908 (-)
G1037087 NA non-coding upstream 176827 10800012 ~ 10800419 (-)
G1037113 NA non-coding upstream 231788 10854973 ~ 10855345 (-)
G1037116 NA non-coding upstream 239554 10862739 ~ 10862946 (-)
LOC110536932 NA other downstream 887762 9684834 ~ 9696461 (-)
G1035717 NA other downstream 1028669 9533500 ~ 9548135 (-)
hcn1 hcn1 other downstream 1534124 9018507 ~ 9206417 (-)
G1035160 NA other downstream 1737970 8836256 ~ 8838834 (-)
G1037216 NA other upstream 479899 11103084 ~ 11103448 (-)
G1037217 NA other upstream 482750 11105935 ~ 11106320 (-)
LOC110536956 LOC106568459 other upstream 590766 11212672 ~ 11231102 (-)
G1038258 NA other upstream 983166 11606351 ~ 11615943 (-)

Expression


Co-expression Network