LOC110539116


Basic Information

Item Value
gene id LOC110539116
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11511158 ~ 11512562 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002475862.2
TTTCAGTTGTTACATTATATCAAGCTAGCGTGTCCTCTCAAACTGCTAGCTACATCACCCTGTAACCTCCATGTGTGCCCTTGCCAAGCATTAGTCTTCAATGTTTGCCCGCAGAAGAAGATCAGAAGAAGAGCCATTCCAGTGCTCTCTCTGCTTGGATGTATTTAGTGATCCAGTCACCACCAGTTGTGGACACAATTTCTGCATGGCCTGTCTCAATGAATACTGGGATAGCAGACACCAGTATCAATGTCCACTATGTCAGGAGAGATTCCCCAGAAGACCTAACCTAGTTGTCAACACAGCATTCAGAGATGTTGTTGATATATTTAAAGCAAGAAGAACAGCCCCTGCCCTTTACCCTGGAATTGTTTGGATCACGGTCCTGATCTTGGTCATGATCTTTGTCCTGATTTTGGTGTTTGTGGCAGACCTGGGTCAGCTCTCACCGCATCTCCTACAGGATCTCCGATCCAAGGACAGGTCTGGGAAGGACTGGTGGTGGAGACAGTGAGAGGAACTTCAGAATGGACTGGGCTATACTTGgtagtttaaaatatatatatatacagttgaagtctgaagtttacatacaccttagccaaatacatttaaactcagtttcaaaATTCATGACATTtagt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002475862.2 True 644 mRNA 0.44 3 11511158 11512562

Neighbor

gene id symbol gene type direction distance location
LOC118937623 NA coding upstream 54346 11441213 ~ 11456812 (+)
LOC110536957 NA coding upstream 271426 11237003 ~ 11239732 (+)
LOC110536781 NA coding upstream 568450 10931794 ~ 10942708 (+)
LOC110536952 LOC106568455 coding upstream 585845 10871314 ~ 10925313 (+)
ctif ctif coding upstream 1080892 10237527 ~ 10430266 (+)
LOC110536961 LOC106568434 coding downstream 55806 11568368 ~ 11602303 (+)
LOC110536962 LOC103361660 coding downstream 93778 11606340 ~ 11615955 (+)
LOC110536966 LOC106568436 coding downstream 165812 11678374 ~ 11696456 (+)
LOC110536969 LOC106568440 coding downstream 193030 11705592 ~ 11751631 (+)
LOC110536782 NA coding downstream 362597 11875159 ~ 11885599 (+)
G1037527 NA non-coding upstream 31801 11478650 ~ 11479357 (+)
G1037471 LOC106568452 non-coding upstream 53922 11417186 ~ 11457236 (+)
G1037515 NA non-coding upstream 60851 11449535 ~ 11450307 (+)
G1037378 NA non-coding upstream 189853 11321105 ~ 11321305 (+)
G1037596 NA non-coding downstream 79278 11591840 ~ 11592289 (+)
G1037613 NA non-coding downstream 128521 11641083 ~ 11641716 (+)
G1037690 NA non-coding downstream 262917 11775479 ~ 11775779 (+)
G1037472 NA other upstream 55962 11452006 ~ 11455196 (+)
G1036562 LOC106568456 other upstream 550035 10958408 ~ 10961123 (+)
G1036319 NA other upstream 1038085 10470315 ~ 10473073 (+)
G1036179 NA other upstream 1324745 10185716 ~ 10186413 (+)
G1039147 NA other downstream 1612362 13124924 ~ 13126167 (+)
G1039430 LOC106568378 other downstream 1769810 13282372 ~ 13283170 (+)
G1040196 NA other downstream 2653108 14165670 ~ 14169934 (+)
G1040578 NA other downstream 2904119 14416681 ~ 14416991 (+)

Expression

LOC110539116 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 3.
End of interactive chart.

LOC110539116 Expression in each Bioproject

Bar chart with 13 bars.
LOC110539116 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 8.
End of interactive chart.

Co-expression Network