LOC110513404 (LOC106568437)


Basic Information

Item Value
gene id LOC110513404
gene name LOC106568437
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11621333 ~ 11665670 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936917.1
ACTGAATTTTATTTCGCGAGATTTGCTTGGCGCGGTGACCCATGTGAGCGACACCTCCTGCAAGAATCATTCTCCCCTGCAGAGGAAAAGGCTATGGAGTGCTGAACGTTTTCACTGTTATTCCCCTTTCCCCCCAAGCCCCTGTATTTGTTGTGATTAGATTTCTGTAACCTTTTTGGTGGCTATCGGGCGGTGGAACGATGTGGATTCAAATTCGGACCATAGACGGAAAGGAGACACGAACCATTGAGGATCTTTCCAGGCTGACCAAAATTGAGTCTCTGAGGCTGAAAATCCAAGATATCTTCAATGTAAACCCCGGACAACAACGGTTATTCTATCGGGGCAAACAGATGGAAGATGGCCACACACTGTATGACTACAACGTGGGTCTGAACGATATCGTCCAGCTGCTTATCCGTTCCAAAGCGGGGGACGCTCCAGACAGTCCTCTCATCATCTCCCCTGTCGTCAGCCCCAAGGAGTGTGACACAACGCCCCCCACCACCCCCAATACTACGACTGGTGCAGCTACCACCCCCTCTAAACCTACCACCGTGGCCCCAACACTTACCCCCAAACCCACcacagtcaacaacaacacaaccaccaCTGACGACACCAGTACTACCACCAACATCAGTACAACTACCAGTAAGAACACGAGTATCACCAGTGATCCCAATAACAACGGAGACGAGTCTTCTTCTGGTCCACCGGCAGCGTTGGAGAAGCACGACAACCAGCCGTCAACCTCTACACGTCCCTTACTCATAGACGCGGGAATTGGGGTGTTCAAGATAAACGAGTTGGTGGACTGCAGGGACATAAGCATCGGTGCCTGGTTTGAAGCCTGCATCGACAACGTGTCACTCAGCCCAAAGGGACAGAACAGCACCAGTAAAGCTCCTACAGCAGGGAAGGTTGGCAGGCCTAGCAAAAGGACGAACGGCAAGCTTGAGACAGAGCCGGGCCAAGGCCAAAGccacctctcctcctcagacaataataataataataataatgggaaTAATTCTACTTCTGTGTTGAACTCTGACAGTATTGGGCCAGGGGCTGGGCCCTCCACCTCTCAAACAGACTATACTGCCACAGACAAAGAGAAGGAGGATGTGACGTACCACATCAGATATGATGATTACCCTGAGAACGGCGTGGTGGAGATGTGTGGCGGTAACGTGCGGCCGCGGGCTCGGACCCTGCTCCGGTGGGACCAGCTCACGGTAGGCCTGGTTGTCATGGTGAACTACAACATAGAGATCCCTGAGGAGAGGGGCTTCTGGTTCGATGCTGAGATTACAGCACTCAATGAGATCTCCAGGACCAACAAGGAGGTCCGCATCAGAATCCTGCTGGGaGGGCCAGGGGACGTCATCCCAGACTGTAAACTGTTGTTTCTGGATGAGATCTATCAGATTGAGAAGACTGGAGCACACTCGCTGTCTGCTGTAGATGGACAGTTCAAACGCAAGAGCGGGCCGGAGTGTAAGCACTGCAAGACGGACCCCGAGTCGGAGTGCAGGTTCTGCTCGTGCTGCGTGTGTGGAGGGAAGCAGGATGCCCATATGCAGCTGCTGTGTGATGAGTGTAACATGGCCTTCCATATATACTGTCTCAACCCACCGCTAGCCACCATACCTGACGACGAGGACTGGTACTGTCCCACCTGTAAGAACGACACCAGTGAGGTGGTTAAGGCCGGGGAGAAGCTGAAGGCCAGTAAGAAGAAAGCCAAGATGCCCTCGGCCCATACAGAGAGCCAGAGGGACTGGGGCAAGGGTATGGCCTGTGTGGGGCGCACTAAGGAATGTACCATCGTCCCCTCCAACCATTACGGGCCCGTACCTGGGGTTCCCGTGGGAACAGCATGGAAGTTCCGCGTTCAGGTGAGCGAGGCGGGAGTGCACAGGCCCCACGTGGGAGGTATCCACGGCCGCAGTAACGATGGCTCCTATTCGCTGGTGCTGGCTGGGGGCTTCGAAGATGAAGTGGACAGGGGAGATGAGTTCACCTACACAGGCAGCGGGGGTCGCGACCTTTCAGGGAACAAGCGCATTGGGGAGCATTCCTTTGACCAGACCCTGACCCACTACAACAGGGCCCTGGCGCTGAACTGTGACGCCCCCATCAACGACAAGGATGGGGCGGAATCCAGGAATTGGCGTGCGGGGAAGCCGGTGAGGGTGGTGCGGAGCTCCAAGGGCCGACGTATCAGCAAGTACGCTCCGGAGGAGGGCAACCGATACGATGGCATCTACAAGGTGGTGAAGTACTGGCCAGAGAAAGGGAAGTGTGGTTTCCTGGTGTGGAGGTACTTGCTGCGAAGGGATGACCTGGAGCCTGCTCCCTGGACACCTGAGGGGCTGGCGCGCATCCAGACACTGGGCCTGGCTGTGCAGTATCCTCCAGGCTACGTGGAGGCCATGGCCAACAAGACCAAGAAGGAGGCTAATGCTCGGCCAGGGTCCAGCAGGAGCAAGAAGCACCCTGGACGGGGCCGGCCGCGGCTACAACCTCTGAAGAAgaaggtgaaggaggaggaggatgaagaagaggaagaggaggaagagaagcccATGGAGGGTACAGACCAGTCACAGAGTAACGGCAGTCAGGAGACAGAGGTGTGTAAGGAATCGACAGAGCCCCGAGCCAAGCGTCAGAAGATGGAGGAGGCGTTCCAACTGACAGAGCAGCAGCAAAGCCTCATAAAGGAAGACCAGCCCAACAGAAAGAACTGGGACGAGGCCATGGGACACCTCAAGGAGGGGCCGAACTTCCTGAGGAAGGTGGAACAGACGTTTATGTGTGTCTGCTGCCAGGAGCTAGCCTACCAGCCCATCACCACCGTCTGTACACACAACGTGTGCAAGACCTGTCTCCAGCGGTCGTTCCGTGCTGAGGTGTATACCTGCCCTGCCTGTCGCCACGACCTGGGGAAGGATTACGTCATGGTCCTAAACAAGACTCTACAGCTGCTGCTGGACCAGTTCTTTCCTGGCTATAGCAAGGGCCGATGAGGACAAGACACCTGCACTTACCCAAACAGTTACACACAGACCCATAATGCATACAAACAAACATAGGCATACACACTTA

Function

NR:

description
E3 ubiquitin-protein ligase UHRF2-like

GO: NA

KEGG:

id description
K15713 UHRF2, NIRF; E3 ubiquitin-protein ligase UHRF2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936917.1 True 3117 mRNA 0.55 16 11621333 11665670

Neighbor

gene id symbol gene type direction distance location
LOC118937665 NA coding downstream 105242 11515387 ~ 11516091 (-)
LOC110536959 LOC106568452 coding downstream 164079 11424257 ~ 11457254 (-)
LOC118937658 NA coding downstream 215248 11404997 ~ 11406085 (-)
LOC110536958 LOC106568460 coding downstream 301257 11255159 ~ 11320076 (-)
LOC110536956 LOC106568459 coding downstream 390231 11212672 ~ 11231102 (-)
LOC110536967 LOC106568438 coding upstream 30981 11696651 ~ 11699966 (-)
LOC110536968 LOC106568439 coding upstream 86065 11751735 ~ 11842433 (-)
LOC110536971 pdl1 coding upstream 190104 11855774 ~ 11861283 (-)
LOC110536972 LOC106568442 coding upstream 225700 11891370 ~ 11961207 (-)
LOC110536975 NA coding upstream 307659 11973329 ~ 12004830 (-)
G1038188 NA non-coding downstream 88903 11478682 ~ 11532430 (-)
G1038171 NA non-coding downstream 174699 11442983 ~ 11446634 (-)
G1038157 NA non-coding downstream 210080 11409000 ~ 11411253 (-)
G1037445 NA non-coding downstream 290669 11330237 ~ 11330664 (-)
G1037443 NA non-coding downstream 296905 11324170 ~ 11324428 (-)
G1038330 NA non-coding upstream 54554 11720224 ~ 11720543 (-)
G1038360 NA non-coding upstream 122552 11788222 ~ 11788762 (-)
G1038440 NA non-coding upstream 275524 11941194 ~ 11941523 (-)
G1038258 NA other downstream 5390 11606351 ~ 11615943 (-)
G1037217 NA other downstream 515013 11105935 ~ 11106320 (-)
G1037216 NA other downstream 517885 11103084 ~ 11103448 (-)
LOC110536951 cr032 other downstream 761251 10850171 ~ 10860150 (-)
G1038295 NA other upstream 1317 11666987 ~ 11738777 (-)
G1038606 NA other upstream 623854 12289524 ~ 12292538 (-)
G1038943 NA other upstream 1054831 12720501 ~ 12721154 (-)
G1039364 NA other upstream 1481988 13147658 ~ 13176443 (-)
G1039366 NA other upstream 1485351 13151021 ~ 13152307 (-)

Expression


Co-expression Network