LOC110536967 (LOC106568438)


Basic Information

Item Value
gene id LOC110536967
gene name LOC106568438
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 11696651 ~ 11699966 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622650.2
GATGTGTTCTGGCTCTAGGGCTGGGAGGGTTAGTAGTTAGAATTGTGTTCTACAGAGGTTTCATGCTAATTAGTCCAGTTCAATGGCTTTAAGCATGAGCGGTTGAACTCGTGACGGTCATAAGAATTATTTTCCTCCCCTCATAGTTCTAACCCATTCTCAAGTCAgagatttaatttttttaaaaagtGAGACTGAGAACTTTGGGAAACAGTGTTGCGAAGCAATTTAGAAGGATCGGACCCTTTCACAATCTACGTAACTATCCACTTTAGGTGTAGTCACTGGATGGTTCAAAGAGATGCCTCGCGGTGACTTCAATGTTTATTTTGCAAGCAGAGGAGGACCCCATGTCAGGAACGAAGAGGCAGCAGGCATAGCTCTGTTGGTCTTCATACTTGCAGCCCTTCTCATCCTCGGATGCTGGTATTTTAGGAGGAGATGTGGGTACAAAATGATTAGGAGCCCAAGATCAGGGTCCCTGCCAGGATTCAGTGGAGGACAGTTCAACGAGGGAGGAGCCACAGCAGAAAACAAGATGGGCCTCAGTGACCTCCGACCTTTGGTTCCCAATGCCCCTCCTGCATATGAGACGATAACATCAGGACCCctacctcctccctactccccctaATAACAGTCCTCTGTGGATAACCAAAAAGATGAAAACTATGAACTTAATGTGATGTCTTATTTAAACTCTATATCAATGACGAAAAAGCTTTTGATGAAAATACTATTAGCAGTCTATATTTACAATTACACAATTTACCATATTTtactcttgtttttttttactatcttgtatttttttttttatgtgtattTCTCCAAAACTTGTTTTGTGTGTTATGTGTTCCTCAAGGTTATATTTCTGAAGGTTGCTCAGCAAACAAGACCCTTCTATCAATACTTGAATAACAGTATATTAATCGATTACAACAAAGTCGTACTTAGGAAATTGCTTGTTCATTTAAGAAAAGAAAAAAGTATATCTGCAATTGAGAATCCATAGTAATTTAAAGACAATAACTTGTTATTTCAACATGTACTTATGAAGGGATTTCAAAAGGATGGAATGGTTATCCCCTAGAAAATCCTGCAGACACATTTCAATAAAAATATAA

Function

NR:

description
melanoma antigen recognized by T-cells 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622650.2 True 1127 mRNA 0.39 5 11696651 11699966

Neighbor

gene id symbol gene type direction distance location
LOC110513404 LOC106568437 coding downstream 30981 11621333 ~ 11665670 (-)
LOC118937665 NA coding downstream 180560 11515387 ~ 11516091 (-)
LOC110536959 LOC106568452 coding downstream 239397 11424257 ~ 11457254 (-)
LOC118937658 NA coding downstream 290566 11404997 ~ 11406085 (-)
LOC110536958 LOC106568460 coding downstream 376575 11255159 ~ 11320076 (-)
LOC110536968 LOC106568439 coding upstream 51769 11751735 ~ 11842433 (-)
LOC110536971 pdl1 coding upstream 155808 11855774 ~ 11861283 (-)
LOC110536972 LOC106568442 coding upstream 191404 11891370 ~ 11961207 (-)
LOC110536975 NA coding upstream 273363 11973329 ~ 12004830 (-)
LOC110536978 LOC106568447 coding upstream 319471 12019437 ~ 12034884 (-)
G1038188 NA non-coding downstream 164221 11478682 ~ 11532430 (-)
G1038171 NA non-coding downstream 250017 11442983 ~ 11446634 (-)
G1038157 NA non-coding downstream 285398 11409000 ~ 11411253 (-)
G1037445 NA non-coding downstream 365987 11330237 ~ 11330664 (-)
G1037443 NA non-coding downstream 372223 11324170 ~ 11324428 (-)
G1038330 NA non-coding upstream 20258 11720224 ~ 11720543 (-)
G1038360 NA non-coding upstream 88256 11788222 ~ 11788762 (-)
G1038440 NA non-coding upstream 241228 11941194 ~ 11941523 (-)
G1038258 NA other downstream 80708 11606351 ~ 11615943 (-)
LOC110536956 LOC106568459 other downstream 465819 11212672 ~ 11231102 (-)
G1037217 NA other downstream 590331 11105935 ~ 11106320 (-)
G1037216 NA other downstream 593203 11103084 ~ 11103448 (-)
LOC110536951 cr032 other downstream 836569 10850171 ~ 10860150 (-)
G1038606 NA other upstream 589558 12289524 ~ 12292538 (-)
G1038943 NA other upstream 1020535 12720501 ~ 12721154 (-)
G1039364 NA other upstream 1447692 13147658 ~ 13176443 (-)
G1039366 NA other upstream 1451055 13151021 ~ 13152307 (-)
LOC110536986 LOC106568381 other upstream 1621244 13321118 ~ 13324415 (-)

Expression


Co-expression Network