LOC110536785 (LOC106568423)


Basic Information

Item Value
gene id LOC110536785
gene name LOC106568423
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 12503059 ~ 12522639 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936940.1
AAAAACCCGTTAAAATGTGCGCAAATAGTAGCCTACTATAAGCAAATAGTTACATTGTATCATGCAGGTGATACAATTTTCTCACAGGGCTTTTGGTGCGGAAGTTGTAATTTAAAACCTTCCACCGATACTGCCAAGGAAAGAGATTCATCTTGAGGGGGGTTTAAAATTGAGGAAAACACCATTTTCCTTATTGCTGACGCGGACTGGGAGCTGTAGCTACATGCAGTAGCTTGGACTGCTACATCCACCATGTTTCTTTGGGTTTTAGTTTTAGGGGTCTTCGTTTCTAGATCAGAATGTTACTTTTCGGAGGAGAAATATCCAGAAGAATCGAAAATGCAGCCGCCAACGGTTGTTATTGCGATCATTGCTCGGAACGCGGCGCATTCCTTGCCTTACTACCTCGGAGCATTGGAGAGACTGAACTATCCCAAAGCACGCATTTCTGTTTGGGCAGCGACAGATCACAATGCTGACAACACTACAGCTGTTCTGAGAGAATGGCTGACAGTCATGCAACAGTTTTATCACTACGTGGAATGGAGGCCTATGGAGCATCCTACGTCCTACCCAGGAGAGATGGGGCCTAAATACTGGAGCAACGGCAGATATGAATACCTGATGAAACTTAAACAGGCTGCTCTCAACTTCGCCAAGACACGCTGGGCTGACTACATACTGTACGCTGACACAGACAACATCCTGACCAACCCAGAGACTCTGAACCTTCTGATAGCAGAGAACAAGTCTGTTGTGGCCCCCATGCTGGACTCTCAGGGAGCCTACTCCAACTACTGGTGCGGCATCACTCCCCAAGGTTACTACCGGCGTACAGCTGAGTATTTCCCCACCAGACAGCGCCACCGGCTAGGCTGCTACCCGGTGCCCATGGTCCACTCTACCTTCCTGCTGGACATGAGGAAGACGGGTATGAAGAAGCTGgccttccaccctcctcacctGGACTACTCCTGGCCCTTCGATGACATCATCGTCTTCGCCTTCTCCTGCCGCGTCTCAGAGGTGCAGATGTACCTGTGTAACAAGGTGAGGTATGGTTACTTGAACGTCCCAGCCAAACCTCACCACACCATAGAGGACGACAGCATCAGCTTTAGTCATCTCATCCTGGAGGCCACCATCGATGGCCCCCCCATGGCCCCCTCCAAATACGTGAGCCTCTTCCCCAAACAGAGAGACCTCATGGGCTTCGATGAGGTGTACCTGATTAACCTGCGTCGTCGTCAGGACCGTAGAGACAGGATGCTGTATTCTCTCAATGAGCTGGAGATAGATGTCAAGGTGGTGGACGCCATCGATGGAGGAGCTCTGAACAGCAGTGATATAAAGATTCTGGGAGTGGACATACTGCCTGGTTACTATGACCCGTTCTCTCGCCGTACCCTGACCAAAGGAGAGGTGGGATGCTTCCTGAGTCATTACTACATCTGGAAGGAGatGGTAGACCAGCAGATGGACAAGGCGCTGATCTTCGAGGATGACGTGCGTTTCCAGGCCAACTTCAAGCGGCGCGTACTGCGTCTgatggaggaggtggagatggtGGAACTGGACTGGGACATCATTTACCTGGGCCGTAAGCAGGTGAAGCCAGGTGATGAGGAGGTGGTGGAGAACGTGAGGAACCTGGTGGTAGCAGACTATTCCTACTGGACCCTGTCCTATgccatctctctccagggtgcCCAGAAACTGCTCAACGCTGAACCCCTCTCCAAGATGCTGCCCGTAGACGAATTCTTACCCATCATGTACGACAAACACACCAATGAGAACTACAAGTCCCACTATCCTAACCGTAACCTGCAGGCGTTCTCCACACGCCCCCTACTGGTGCAACCAGCCCAATACGCCGGGGACCCCAAGTGGGTGAGCGACACAGAGACCTCCACGCTGTGGGACGACGACAACGTGCGAACAGACTGGAGGGGCTCCCACAAAACGCTGAAGGGGGCTCCCCAACCCGACATGCTGCAGACGTCATATAAAGATGAGCTGTAGTTCAACCACACGTATTCATGCCTGATTCACACTGCACGGCCAACCCCATCCTTACTGCGCTGACTTGGATTTGGTCTTTTCACGTTGTTCTTTTACAACACGGTTCCAAAAACAACTGTGGATGCATAACGAGGCAGGTAGTGTTTGGTTTGACTCGGTAGTGTGAGAAGGGTTACTGGTTATGGTGTCATTGCTGACTGTGCCATTCATCAGCGACACTTCCTTTCTCACTGTATAATTGGCCATTTTGTATTTGGTACGTCGGTCCATAATCACTGGGAGTGACTGAATATACAGACAGCAGTGATGCTGGCGGAGGCTCTATAGACTTGGTCAAGTGCCCCAAGACCTAATTTCaaagtgtgtgtgggtttgtttgtgtgtgttcaaatCAAGTGATGCATGTTAGGAATGGCACTCTCCTATACTGTCAGACACCTTcaagggttggggtcaatttcaaATTGAAGGcattcaattcaggaagtaaactgaaattacatttcaattatggattaaaaaaaaaatatatatatatatatatatagcacagTTGGGGTCAATTCCTATTGAAGCCAGTCAGTTCAGGTAGTGAATTGaatttaaaattaattaaataaataagctTCTACTATTCAGTTTATTAAGACATCattgataaaataaaataaataaataaatatatatatcaataggaattgaccccaactgtgctattttgcaCTGCATAGCACTCCAGGGCCTGGGTGAGTGACCCTCGCTGTACATCTAGTCACTGGGCGTCAGAAAACAGAAATACTGGAGGAAACCATTCTCTTTTATATCACATTCTACTCATTCTGTGTGGTAATATGTTAGgagcagtgtctctctctaggcctGACCTCATGGTAGACTTACACCAGATCAACAGTCCAGAGAGAAGCCTGCAAACCATATTCTCCTGACATCATTGATGGTGTCAGTTGCCACGACAATCAAGTTACATTCTGACTGAGCTCATCTATATTGGTTTGTGTTGATGTATTTTTTCTGTGTACAAATTCTATTATTTGTACAATTCATATGGACAGTTTTCCTAATTTATTTCTAGCATTATATTGTGCTTTTTGAATGCACAGTATTAAACCCAAGTGCAATGTCTTAATTGTAATGAAATTCCCTCTTTGTCAAATAAATGACTATACTGTACCTTGATGTCAAGCAACTTTGAAGATCAAATGTTTTTCAATAGTAGCACATTTGGCAGAAGCTTTGTCAGTGCCAAAACTGTTCAAAAACGGATGTGACAATGATGTAACTAACTTTATACATGATTAAAAATCAACTTTTTCAATTTTTA

Function

NR:

description
procollagen galactosyltransferase 2-like

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936940.1 True 3367 mRNA 0.46 12 12503059 12522639
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110536783 LOC106568425 coding downstream 220246 12247792 ~ 12282813 (-)
LOC110536982 LOC106568426 coding downstream 307606 12165715 ~ 12195453 (-)
ambp ambp coding downstream 353858 12144886 ~ 12149201 (-)
LOC110536978 LOC106568447 coding downstream 468175 12019437 ~ 12034884 (-)
LOC110536975 NA coding downstream 498229 11973329 ~ 12004830 (-)
LOC118937673 NA coding upstream 24677 12547316 ~ 12549945 (-)
LOC110536786 LOC106561608 coding upstream 118288 12640927 ~ 12758875 (-)
trnaa-ugc-52 NA coding upstream 414309 12936948 ~ 12937021 (-)
LOC110536788 rabgap1 coding upstream 558761 13081400 ~ 13255741 (-)
LOC110536985 LOC106568377 coding upstream 656084 13178723 ~ 13184969 (-)
G1038715 NA non-coding downstream 23141 12475991 ~ 12479918 (-)
G1038714 NA non-coding downstream 25456 12473152 ~ 12477603 (-)
G1038667 NA non-coding downstream 94298 12402030 ~ 12408761 (-)
G1038657 NA non-coding downstream 107875 12377585 ~ 12395184 (-)
G1038564 NA non-coding downstream 271600 12202314 ~ 12231459 (-)
G1038751 NA non-coding upstream 24197 12546836 ~ 12547063 (-)
G1038767 NA non-coding upstream 103376 12626015 ~ 12626280 (-)
G1038769 NA non-coding upstream 105040 12627679 ~ 12627979 (-)
G1038885 NA non-coding upstream 112641 12635280 ~ 12635479 (-)
G1038887 NA non-coding upstream 115422 12638061 ~ 12639005 (-)
G1038606 NA other downstream 210521 12289524 ~ 12292538 (-)
G1038295 NA other downstream 764282 11666987 ~ 11738777 (-)
G1038258 NA other downstream 887116 11606351 ~ 11615943 (-)
LOC110536956 LOC106568459 other downstream 1272227 11212672 ~ 11231102 (-)
G1037217 NA other downstream 1396739 11105935 ~ 11106320 (-)
G1038943 NA other upstream 197862 12720501 ~ 12721154 (-)
G1039364 NA other upstream 625019 13147658 ~ 13176443 (-)
G1039366 NA other upstream 628382 13151021 ~ 13152307 (-)
LOC110536986 LOC106568381 other upstream 798571 13321118 ~ 13324415 (-)
G1039504 NA other upstream 832661 13355300 ~ 13355795 (-)

Expression

LOC110536785(LOC106568423) Expression in all Baseline Samples

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LOC110536785(LOC106568423) Expression in each Bioproject

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LOC110536785(LOC106568423) Expression in each Sample
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Co-expression Network