Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110536984 |
| gene name | strbp |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 12867389 ~ 13059885 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| strbp | Predicted to enable double-stranded RNA binding activity and single-stranded RNA binding activity. Predicted to act upstream of or within cell differentiation and spermatogenesis. Is expressed in heart tube; nervous system; neural tube; notochord; and pharyngeal arch 3-7 skeleton. Orthologous to human STRBP (spermatid perinuclear RNA binding protein). |
| description |
|---|
| spermatid perinuclear RNA-binding protein-like isoform X1 |
| id | description |
|---|---|
| K13200 | STRBP; spermatid perinuclear RNA-binding protein |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036936946.1 | False | 4285 | mRNA | 0.50 | 18 | 12867389 | 13059884 |
| XM_036936951.1 | False | 3064 | mRNA | 0.53 | 18 | 12868472 | 13051975 |
| XM_036936950.1 | False | 4121 | mRNA | 0.50 | 18 | 12868472 | 13059883 |
| XM_036936945.1 | False | 4131 | mRNA | 0.50 | 18 | 12868472 | 13059884 |
| XM_036936948.1 | False | 4053 | mRNA | 0.50 | 17 | 12868472 | 13059884 |
| XM_036936952.1 | False | 3054 | mRNA | 0.53 | 18 | 12868473 | 13051975 |
| XM_036936947.1 | False | 4080 | mRNA | 0.50 | 18 | 12895984 | 13059884 |
| XM_036936949.1 | False | 3914 | mRNA | 0.50 | 17 | 12993552 | 13059884 |
| XM_036936953.1 | True | 3724 | mRNA | 0.50 | 16 | 12994251 | 13059885 |
12,780,000
12,800,000
12,820,000
12,840,000
12,860,000
12,880,000
12,900,000
12,920,000
12,940,000
12,960,000
12,980,000
13,000,000
13,020,000
13,040,000
13,060,000
13,080,000
13,100,000
13,120,000
13,140,000
13,160,000
NC_048576.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| dbh | dbh | coding | upstream | 508915 | 12308661 ~ 12358474 (+) |
| LOC110536981 | NA | coding | upstream | 701876 | 12157213 ~ 12165513 (+) |
| LOC110536980 | LOC106568448 | coding | upstream | 754530 | 12108368 ~ 12112859 (+) |
| exd3 | exd3 | coding | upstream | 767326 | 12035984 ~ 12100063 (+) |
| ak3 | LOC106568444 | coding | upstream | 849884 | 12006145 ~ 12017505 (+) |
| LOC110536991 | morn5 | coding | downstream | 369067 | 13428952 ~ 13439502 (+) |
| mrrf | mrrf | coding | downstream | 436728 | 13496613 ~ 13512145 (+) |
| anxa3b | anxa3 | coding | downstream | 476979 | 13536864 ~ 13545128 (+) |
| LOC110536999 | NA | coding | downstream | 532940 | 13592825 ~ 13595786 (+) |
| LOC118937681 | LOC106568394 | coding | downstream | 571542 | 13631427 ~ 13637704 (+) |
| G1039007 | NA | non-coding | upstream | 21653 | 12845516 ~ 12845736 (+) |
| G1038994 | NA | non-coding | upstream | 32257 | 12834743 ~ 12835132 (+) |
| G1038879 | NA | non-coding | upstream | 43344 | 12823506 ~ 12824045 (+) |
| G1038862 | NA | non-coding | upstream | 83995 | 12782352 ~ 12783394 (+) |
| G1038858 | NA | non-coding | upstream | 99604 | 12766696 ~ 12767785 (+) |
| G1039122 | NA | non-coding | downstream | 1457 | 13061342 ~ 13065306 (+) |
| G1039121 | NA | non-coding | downstream | 5496 | 13065381 ~ 13120652 (+) |
| G1039127 | NA | non-coding | downstream | 14385 | 13074270 ~ 13075218 (+) |
| G1039167 | NA | non-coding | downstream | 106523 | 13166408 ~ 13168178 (+) |
| G1039178 | NA | non-coding | downstream | 127577 | 13187462 ~ 13188804 (+) |
| LOC110536961 | LOC106568434 | other | upstream | 1294554 | 11568368 ~ 11602303 (+) |
| G1037472 | NA | other | upstream | 1412193 | 11452006 ~ 11455196 (+) |
| G1036562 | LOC106568456 | other | upstream | 1906266 | 10958408 ~ 10961123 (+) |
| G1036319 | NA | other | upstream | 2394316 | 10470315 ~ 10473073 (+) |
| ctif | ctif | other | upstream | 2437210 | 10237527 ~ 10430266 (+) |
| G1039147 | NA | other | downstream | 65039 | 13124924 ~ 13126167 (+) |
| G1039430 | LOC106568378 | other | downstream | 222487 | 13282372 ~ 13283170 (+) |
| G1040196 | NA | other | downstream | 1105785 | 14165670 ~ 14169934 (+) |
| G1040578 | NA | other | downstream | 1356796 | 14416681 ~ 14416991 (+) |
| G1041168 | LOC106568367 | other | downstream | 1836473 | 14896358 ~ 14903843 (+) |
