LOC110536985 (LOC106568377)


Basic Information

Item Value
gene id LOC110536985
gene name LOC106568377
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13178723 ~ 13184969 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622667.2
GTATATTATAAATATAGCCTCTATACTTAGCCTCTGGTGTGtgcagagcagaggggagaggtgCGTGCCCGACTCTGGCGGTGCATCTTTGAGCTTCATCACGCTACATCCATCTCTCTGCCACGAGGCCTGATGAGACACTGCAGAACTAACAAAGATATCCGGACCGTGACAGACACACTGCGGTAGAGATGGACGGAcggcggagagacagacagtgatgcGTCTGGGAAGAAACTCAAAGACAAGGCAGTCAGTCATTGTGGGACAGACCAGTAGGCAACATCTAAGTCATGCTCCGTCAGTTTGACCAATGACAACTCTTTCATCTTCATTATTCATTGTTTTTACGTGAGGAAGGGTTGTCAACCAACTTGAGAAAAGGTGCAAAATAAATGAGCTTAAGAAAGGAAAATGCACAACTCGCAATTCAAAACGTTTTTAATTGTGACGGTTTCGGCCGTCCTTGGCCTACATCTGTGGGAGGCATGACTGGACTGTGTTGTGATGAGCGTCTTCAGTTCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGCGGTCCTCAGAGCAGAAGACACTCTGTGGTCCTCAGAGCAGAAGCTAAATGAAGGAAAAGCATCTGGTGATGCAGCCTAATGAGAAGCAGGTGTATgagagatgacacacacacacttcaatgaAGGGCCTTGAGGAAAGAAGTGCATGTAAACACACTCATCTCACACAGTGAGTCCCCTGAGGGACACTAGCTATATTCATATTAATACAAATCACATAAGCCAATCTTAAACATGTTGTAAACTCTGGAAGTATGGTCTTAAATGTCAAATTTGGTATTGTTTTATTGATATGCTGCATGTTAATGGGAGGTGCTAGTTCAGGCTGACCTGCTAATGTTGGCCAGCGCCCACAGCCACACAGGCTTTTACTGGGAGCACATTCAATGACTGCAAACATGTCGTTTCAGTGTTTCTGTGGTGTTTACGGTTAAAGTTGAAGAAAAATGCTAAATTCCTTCACAAGATGGACAATAAGGTTTGAAAACACAGATATGCTATAATTGTGTACTCCCAATGCCCTGCTCATATAAAGTCAAGATCTCCCACAATACAGTTTGATGGGAAAGCCCTGTCCTGGCTGCTAAGACAATTACTATAACAATACACAGTACATATAGCTAAGTTCCAAAAAACACATGAGTATTTATTTGATTTAGCATCAACTGGGTGAGACCAAGGACCCAAAGCACAGATAACATCCACTGATGTCATTTCAACTATGTGAAAATGTGTGAATCTGAGAGAGTTCGCCTAGTACTAGTGAGGTACTACGTGTGTGTCAGTCAAGCAATGAGGAACAATTGGGATTGGCATTTCGGTTAACTTCCTGATTAACTTCATAAAAATGGAAGTGAAACTCCAACCATGGTATTtggaagagggagagtgaggacaTTGTTTGTATTATAGGAGTACACAAATAACCCAATATTAAAACCTATATGGCTGCAGACAGAAACATATGCTAGCAAAACCGCTGGGATCCAAATGTGGTTATATACATCCTAAAGGTATCTAACaagaagagagatggggagaagggcctttttAACATGAGACTGGTATGACCATAATGCACCAGGTGTTTCTAGATAAGACGGTGTGTGCAtatgagagagaggtggtgtgtgtgggaGTTAGATAGTGGCGGCAGGGGTATGCTGtgtgcagccagccagtcagtcagtcatgggATGAACGAGTGAGACTTGTGTACCCACAGCTGCTTACTGGCTGGAGCCAGAACAGGGGGAGGAGTGTCTCTACCCTGCctgctgcagggagagagaggtagttagAGAGAGCAGACCGTGAGAGAAACAAGACTGAATCCGCTCcacagaagagggagagaaggagcagaaagagaggtAGTTAGAGAGAGCAGACCGTGAGAGAAACAAGACTGAATCCGCTCcacagaagagggagagaaggagcagaaagagaggtAGTTAGAGAGAGCAGAGCGTGAGAGAAACAAGACTGAATCTGATCcacagaagagggagagaaggagactgTGAGAGAAACAAGACTGAATCCGCTCcacagaagagggagagaaggagcagagagagaggtagttaaGAGAGAGCAGACTGTGAGAGAAACAAGACTGAATCCGCTCcacagaagagggagagagcaaaggaaagggacagagagagaggttggggtcGCTGCATCGGTATGCctgctcctcctgctctctcATTTCCACTCCACACGCTGCTGCCTTTCTGAGTAGACCCAGACTCTGTTTGAAATGCCAATCACCTCCTTGAGGCTGCGCCTTCATCTTCATTCATTTACATTTATTCTCACCTTTCCCTGCGTGAGGGAGACCGGGACTGCCTAAGACATTCGTGGAGGATCATTTCTGCTGAAGTTGCTGTGAAGAAATTCTGCTCTTTGGACGCAATCCGCCTGATCTTTCCGTGTTTGGAGAGGACACAAAGTTTCTGGAAACATCGAACTCTATATCACCTGGAATATTTGAGAATTTGTGACTGCATTTTTTAGAGACATACAGGAATTCCTGTAAGCCAAGACGATCAAACTTGTTGACCGTTTTCTATATTTTCCCTGCTACTCTTGCAGGGCAGGCACAGAGCGCGGCAAGTGTTGTCTATGTCTTTTCTAAGGAGAGAACCAGAGGAGTAGAAGGATAGGCTGCCATAGTATTTGTCctccatctgtgtgtgtctgtatgattGAACCGTCTGTGTCTGCACAGTGAGGGATGCCCTGGGGGACTCCCAGATCCTGGTCGAGGGCTAGTCTTCACGTTGCTGCTGATATGGCAGAGGGTACACGGCTCCTCTCTCTCGGCCACCAGCCTGATCTGCTGCTGAGCTAGGACCAGGACTAGGACCAGGACTAGGACCAGGACTACCAGCCCCAGCCAAGCCCCCTGTCTCTGCGTCTAGGACCAGGACTACCAGCCCCAGCCAAGCCCCCTGTCTCTGCGTCTAGGACCAGGACTACCAGCCCCAGCCAAGCCCCCTGTCTCTGCGTCTAGGATCAGACCAGACAAGGATCTTTCTGGAGCCTCCTGCCCTCTGTCGGTTGATTTGGTTTCAGACCAGGAGCTTTCAGAAGGCTCTCTGGCTGCAAGATGATGAACTCTTCCCTGGACCTGCTGGAGCTTGAGCTCCTCAACCTGAGCGGCCCTCCTTTCTGCCTCCTGGACGTGGGCTACAGCCAGATCTTAAACACCTGTCTACTGGAGGTAGCCATCATCCTGCTGCTTACCGTCCTCATCATCTCTGGCAACCTGGTGGTGATCTTTGTGTTCCACTGTGCTCCTCTTCTCCAGCACCACACAACCAGTGCCTTCATCCAGACCATGGCCTACGCAGACCTGTTGGTGGGTGTCAGCTGCCTcatcccctccctgtccctcctccaccacctgaaAGGCCTGGACGAGGAGCTTACCTGTAAGGTGTTTGGTTACATGGTTTCCGTGTTGAAGAGCGTTTCCATGGCGTCGCTGGCGTGTGTTAGCGTGGACCGCTACATGGCGATAACACGGCCTCTGTCGTACGCTACCTTGGCGACGCCGTGCCGGATCCGCGCGTGCATCCTCCTCATCTGGGTCTATTCCGCCCTTGTCTTCTTGCCCTCCTTCTTCGGCTGGGGGAAGCCCGGCTACCACGGCGACGTGGTGGAGTGGTGCGCGGTGGAGTGGGAGACGAGGCCACTCTTCACATCGTTCATTGTGGCGCTGCTCTACGCGCCAGCCGCCATGACGGTCTGCTTCACCTATGTCAACATCTTCCGGATCTGTCGGCAGCATACGAGGGAGATCAGCGAGCGCCGCGCCCGCTTCGGCCCACAGGAAGGCTCTCTGGGACAGGATGGCCAGCCGCAGCATGCGCCGGCGTGCACGGACAAACGCTACGCCATGGTGCTGTTCCGCATCACCAGCGTCTTCTACCTCCTCTGGCTTCCCTATATCCTGTATTTCCTGCTGGAGAGCGCTGACATCTACAGTCACCCTGCCGCCTCGTTCATCACCACCTGGCTGGCTATCAGCAACAGCTTCTTTAACTGTCTGATCTATAGTCTGTccaacagtgccttcaggaagggTTTAAAACGcctctgtttgttctgtgtgCAGCGCGTGGACAGTAAGAAGTCCTTCAGCCCCTCACCAGGGTACGGCCAGGGGCCCATCTGCACACGCTCCACATGCCATGTCTAGGATCTCCCAGAGAGCCTTGTGGCGGTTGAGTCAGAGTATCGTGTTGTTATAGCACTAAGCATGTCCCATACTGATGCTGAGCTAAAGGGAACAGGCTTCACAGGGAGTTGTGTCGCTCCAGATGCTGCAGATGCTGCTGTTTCTCGACAGTTGAAGGTTTGTTGGAGTGTTGCGTCCCTGGCCACTGCTGCCACTGACGGGATCGTCTCCAGGGCCTGAGAGCTGTGAGACCCGCTTGGGAAGTACAGCCAAGGCTCAGCCCCAGCCacgagagaggtgggagaggtgggATGTGGAGTTACCCTAACCTTTGACTCCTGATATAGATGACGGCGTTATGGCTACGTCGTTTCAGCGGGTGAGAGTTGAGGTGACTGAAGACCTCCCTTCTGACAGTACTTGCCAAAAACACAAACTGTAAGAAGAACATGTTGTTTTAGGGTGTTTTTCTGGGACTCTGTGTCTTCCTAGCAGTCTGGGAAACTATTTGTATTTGTGCTACAATGTATAGAATGCAGAAAAGGACTCGCGttacttaaaggtccaatgcagtcaAAATGAATTTTTTCCTGTTCCATTtccattttagtaatttagcaggcgCACTTATCTAGAGCAAATTACAATTAGCAGATTCATCTTAAgacagctaggtgagacaacaacacatcacagtcgtatcaagtacattttccctcaacaaagtatctatcagcaaagtcagtgccaGTAAAACACTGTGAGAGTTATTTAAGATGCTCTTCAAAGAGGTAGGGGTTCCAGACGTTTCAGAAAGATGGGCTGTCCTGACTTCGGGGGGAAgcttgttccaccattggggtgccaggacagagaagagctttgactgaGTTGAGCGGGAACGTccctcccgtaggggtgggagagccaagagaccagaggtggcagaatggagtgctcgggttgggatgtagggtttgaACATAGCCTGACgttagggaggggcagttccccttGCTCCTCCGTAGGCAAGCACCAGGATGCCAGTAGAGTGAGTGGGGTTACAAGGAGAACCTAGCAGGGTTGAGCCCCAGGCAGCCTGCGGCATTTATAATCTACTACTaatacagtaaggtacttaattgttacccagaaatgatttgatgttAATATAAAAatagctgcattgggcctttaaaaaAATGGAGAAACACTTGATTGCTGCTTTCTTATGCCTAGCTGAGTGGAGCTGTCAATAACAACTTATTTAAATGTTTGCCCTTGTGGTTTTTACAGAAACAGATTATTTACAACATTGTGCGCTGAGGGGTGCAACAACCTCAAACTCTGAAGAGAATCTTGTAGGTCTACATCATTTATTTACATCTGAGTTGTtctgaggcagagaaagagaggactttGTTTAGGTGCTCAAACACCAGGGTTATTAGTAAAGCCTGACCGATATATTGGTTCACTGATATTATTGGCTGATATGGGCTATTCCACCGATAAACGATGTTCAATGAATAGGATGGGGAAAAAAATAATCTCATGCTTTTCTGAATGATTGCGGCTGTTCCCATGAAGTGTTATTCATTTCACAGTGTAAGAAATCAACATTTGAAGTGTATTTCTTGGACGGCAATTTATGTGGATAAGAGTATATCAGCAGATATATCAGTAAGTTTTGTCACCCCAAAAATCTGAATCGTATCGGATCCCC

Function

NR:

description
probable G-protein coupled receptor 21

GO: NA

KEGG:

id description
K04318 GPR21; G protein-coupled receptor 21

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622667.2 True 6247 mRNA 0.49 1 13178723 13184969

Neighbor

gene id symbol gene type direction distance location
trnaa-ugc-52 NA coding downstream 241702 12936948 ~ 12937021 (-)
LOC110536786 LOC106561608 coding downstream 419848 12640927 ~ 12758875 (-)
LOC118937673 NA coding downstream 628778 12547316 ~ 12549945 (-)
LOC110536785 LOC106568423 coding downstream 656084 12503059 ~ 12522639 (-)
LOC110536783 LOC106568425 coding downstream 895910 12247792 ~ 12282813 (-)
LOC110536789 LOC106568378 coding upstream 90200 13275169 ~ 13318946 (-)
LOC110536986 LOC106568381 coding upstream 136149 13321118 ~ 13324415 (-)
LOC110536988 LOC106568382 coding upstream 150832 13335801 ~ 13354661 (-)
LOC110536990 LOC106568384 coding upstream 233245 13418214 ~ 13422990 (-)
LOC110536992 lhx6 coding upstream 257547 13442516 ~ 13466878 (-)
G1039372 NA non-coding downstream 5150 13169169 ~ 13173573 (-)
G1039368 NA non-coding downstream 16847 13161182 ~ 13161876 (-)
G1039365 NA non-coding downstream 28151 13149658 ~ 13150572 (-)
G1039358 NA non-coding downstream 41901 13135790 ~ 13136822 (-)
G1039338 NA non-coding downstream 140545 13036303 ~ 13038178 (-)
G1039389 NA non-coding upstream 44595 13229564 ~ 13229834 (-)
G1039254 NA non-coding upstream 51162 13236131 ~ 13237634 (-)
G1039422 NA non-coding upstream 87935 13272904 ~ 13273147 (-)
G1039426 NA non-coding upstream 89181 13274150 ~ 13274385 (-)
G1039501 NA non-coding upstream 161790 13346759 ~ 13348599 (-)
G1039364 NA other downstream 2280 13147658 ~ 13176443 (-)
G1039366 NA other downstream 26416 13151021 ~ 13152307 (-)
G1038943 NA other downstream 457569 12720501 ~ 12721154 (-)
G1038606 NA other downstream 886185 12289524 ~ 12292538 (-)
G1038295 NA other downstream 1439946 11666987 ~ 11738777 (-)
G1039504 NA other upstream 170331 13355300 ~ 13355795 (-)
G1040300 NA other upstream 993689 14178658 ~ 14180141 (-)
G1040432 LOC106568413 other upstream 1122631 14307600 ~ 14311052 (-)
G1042500 NA other upstream 2919194 16104163 ~ 16104883 (-)

Expression


Co-expression Network