LOC110536988 (LOC106568382)


Basic Information

Item Value
gene id LOC110536988
gene name LOC106568382
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 13335801 ~ 13354661 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036936959.1
TTCTCCagactcttctctccctctttctctttctcactgaAGAAAACAGAATCCAGCGCCGTCATGTCGTCCAGTTTCTCAGTGCGGAGCTTCTCTGTGGGCCGTCAGCCCTCTTTCTCAAGCCTGTCTCTGAGAGACAGCGGCCGTGCCCGCTCCAGAGCTGCCGTGTCCTTTGCCACCAGCCCCCTGACCCGCTCCGCCTCCATCAGCCATGACCTGAACAGAGTTCCAGTCACCCTGAACCTCAATGGGCAGCTGGGCAACCACACCAACGAGAAGGAGGCCATGCAGGGCCTCAACAACCGCCTGGCCACTTACCTGGACAAGGTGCGCTCCCTGGAGACGTCCAACGCAGACCTGGAGCTGAGGATCAAGCAGATAATGATTGAGCGCCTCCCTAAAGGTCACGACTTCGAAACCATGATGGCCCAGGCCCACCAGGTGGAACAGGAGGTGAGGAAGAAGACACTGGAGAACGCTCGCCTCATGCTGGAGATTGACAATGCTAAACTGGCAGCCGACGACTTCAGGATCAAgtggGAGACAGAGTTGTGCATGTCCCAGTCTGTGGAGAGGGACTGTTTGGCCCTGAAGAAGGCCAAGGTGGACCATGATCAGATCATTGGGTCCCTGAAAGGAGACCTAGACAGCCTGAAGGAAGAGATCTACTTCCTGAAGAAGAACcatgaggagGAGGTTGAGTCTATGAAGGGCCATATTGCTGCTCAGACTGTGAACGTGGAGGTGGACGCGGGCCGTGGTGGACCTGAACTGGGCACAGTAATGTCAGAGCTCAGAACTCAGTACGAGGGCATCATCAAGAAGAACAAGGACCAGGCTGAGCAGTGGTACCTCAAGAAGCTGGAGATGGTGCAGAACGAGGTAAAGGAGTCTAACGAGGCTCTCAGGGGGGCTCAGAGTGAGTTGGTGGAGAGACAACGCTTCCTACAGAACCTGGAGGTGGAGCTGGAGAGTCTGCACAAACAGGTGTCAGCTCTGAAGGGTAACCTGGGGGAGACAGGTCAGAAGTACAGCCTGGAGATGGAGCGTCTGCAGACCACGCTGTCCCAGCTGGAGGAGGACCTGTCTCAGCTGCGTCTGGACATGCAGCGCAACAAGACGGACTATGAACAGCTGCTCCGCATCAAGCAGAACTTAGAGATAGAGATCGCCACCTACAGGAGActgctggagggagaggagacGATTAAAGAAGTACCATCACCAAAACAGGAGCCGGATGTGCGGACCAGGAAGATAGTGAAGGTGGTGACTCAGACTATGATCAACGGCAAGGTGGTGGATGAGTCCAGCGAGGTGGAGCAGATACAGGAGgaggtgaagaagaagaagaagtgagaagggcctcatcatcatcatcatcatcatcatcatcatcttcatatAGCCTTgttaatgttattttattgtgttattttttaaattaatttttactttatttagtaaacattttcttaactataatttcttaaaactgcattgttggttaagggcttgtaagtaagcatttcacagtaaggtctacacctgtgtgacaaataacatttgatttgatcgttTCTTCTCACACATCGTGGTCAAGGGCCAGCCTTACCCACTGACCCTCAGGGGCCTCCACTAACATGGATGTCTGTTTCAATCCCATCATAGTGTTAGTCTTCCCTGTTCCTTTCACAGCCTCATGGATATGTCTGGGGACACTATgagctatatagtatatagtatgcatacaataacataataacacaataaTATGAGATGTACTGAAAGTCAATGAGATGTATCATATGGCATCTGTCCCTCAGTTGTCACATGACTAACATGGCTGTTGTTTAATAAAACGTTTTGCTTTGTGCATTAAACTGTTTATTTCTATATTTAGGTAACAAGCAATAGACACAGTAAATCTCTTTCAACTGAACTGCATCTTTTGGGCTGGGCTTTCAACAGGcttttgtgtctgtgtctatgaACTTCTGTAATGTCTGAAATAAAGGTTTGTCTTTTAGTCAAA

Function

NR:

description
keratin, type I cytoskeletal 18-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036936959.1 True 2035 mRNA 0.49 11 13335801 13354661

Neighbor

gene id symbol gene type direction distance location
LOC110536986 LOC106568381 coding downstream 11386 13321118 ~ 13324415 (-)
LOC110536789 LOC106568378 coding downstream 16855 13275169 ~ 13318946 (-)
LOC110536788 rabgap1 coding downstream 80060 13081400 ~ 13255741 (-)
LOC110536985 LOC106568377 coding downstream 150832 13178723 ~ 13184969 (-)
trnaa-ugc-52 NA coding downstream 398780 12936948 ~ 12937021 (-)
LOC110536990 LOC106568384 coding upstream 63553 13418214 ~ 13422990 (-)
LOC110536992 lhx6 coding upstream 87855 13442516 ~ 13466878 (-)
LOC118937626 rbm18 coding upstream 112371 13467032 ~ 13497193 (-)
LOC110536995 LOC106568389 coding upstream 166614 13521275 ~ 13554757 (-)
paqr3b LOC106568390 coding upstream 211562 13566223 ~ 13571020 (-)
G1039426 NA non-coding downstream 61416 13274150 ~ 13274385 (-)
G1039422 NA non-coding downstream 62654 13272904 ~ 13273147 (-)
G1039254 NA non-coding downstream 98167 13236131 ~ 13237634 (-)
G1039389 NA non-coding downstream 105967 13229564 ~ 13229834 (-)
G1039372 NA non-coding downstream 162228 13169169 ~ 13173573 (-)
G1039824 NA non-coding upstream 139518 13494179 ~ 13494479 (-)
G1039843 NA non-coding upstream 165369 13520030 ~ 13520304 (-)
G1039846 NA non-coding upstream 169033 13523694 ~ 13523938 (-)
G1039848 NA non-coding upstream 170264 13524925 ~ 13525141 (-)
G1039851 NA non-coding upstream 174923 13529584 ~ 13534446 (-)
G1039364 NA other downstream 159358 13147658 ~ 13176443 (-)
G1039366 NA other downstream 183494 13151021 ~ 13152307 (-)
G1038943 NA other downstream 614647 12720501 ~ 12721154 (-)
G1038606 NA other downstream 1043263 12289524 ~ 12292538 (-)
G1039504 NA other upstream 639 13355300 ~ 13355795 (-)
G1040300 NA other upstream 823997 14178658 ~ 14180141 (-)
G1040432 LOC106568413 other upstream 952939 14307600 ~ 14311052 (-)
G1042500 NA other upstream 2749502 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 2970302 16324956 ~ 16328168 (-)

Expression


Co-expression Network