LOC110537010 (LOC106568408)


Basic Information

Item Value
gene id LOC110537010
gene name LOC106568408
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 14120153 ~ 14155328 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622710.2
TCATGGAAGTACACATCTAGAAAGAACTGCCAGTGAACATAGTTGTGAATTCACCTTCTAGAGAATGTGGTTTCCCCTCTCTGCAGTCTACTCAATTTCCGACCATGACAAAAAATGTGTCATCATCCCTAAACATGAGACCAGTGGAACATAGGGCAAgtcaaagagagacagacattctCTCAGGGGTCTGTAATGGAACCTCAGCATCAGACAGGAAGGAATGAACAAGGTGAACAGAGAAAGTAGTGGGACCACGTGTGATGTGACTCACTGATGAATAGcgtctgctaccaatgactggatcAGAAATAGAAGTAGCCAGGTTCTGGACCCTGTTGAGCCTTCCTGGGCCTCATCCAGGGGAGAAGGCGGCGTGGCCAATGGGCCTCACCCTTGACCACAGACATACGGATGAAGAACCCAGACATTGGTATAAGCAATGTACAATGAGACAAATAATGAGCAAAGTTATCATTCTGGCTGATCTTCTCTGGTTAGTCAGACATTATTAACAATCACACAGACTATTCCATTCTAGTGGATGGTGAGACTGTATTCACCACTGGAGGGTAAGGTGTGTCCAGTTGTGTGTGTTTCCCTGGGTCCTCTGGGTGATAGCGGGATGCTGCGGAGGGGTCTGCTGGCCTGGGTGTCCCGTGTGGGCGTTCTGCTGGTCCTAGTGTGctgctctctgtccctcctctacGTTATGACCTGCAGCCCCCACTCCGAGGACAACCTGGTGAGCCATGCCCTGCCACGCCCCGGGATGGGGGTTGGGGTAGGAGGGGCAGCAGGGGGCACGGGGGCGGCTCAGAGCGGACCCACTGGGCGGAATGGATACCAAGCCATGCTTGCAGAGCGCGAGGAGCAACACAAGTTCCACATCACTAGTTTAAAGAAACAAATCGCCCAGCTGAAGGAGGCGCTACAGGAGCGCAGCGAGCAGCTGAAAGGAGTTCAAGACTCcatggagagggggacagggggaggccGGGGTGGCCAGTCCCCAGGAGGAGGTATCCTTGGGGAGGGAGGACAAGGGCCAGGGGCCGACAGGAGCCACGCTGACCTTCAGGAGTTCCTCCACAGTCAGCTGGGCCGGGCGGAGGTCCACCAGGGGACTAGACTACCCAGTGAGTACGCCATGGTGCCCTTCGAGAGCTTCACCCTGCAGAGGGTGTACCAGCTGGAGATGGGCCTGACAAGGCACCCTGAGGAGAAGCCTGTGAGGAAGGACCGGAGGGATGAGCTGAGTGAAGCGCTAGAGACAGCCCTGCAGAGTCTCAACACACCCCGCAATGGAGCAGGCAAGGGCTACACCACCAAGGTCTACTCAGCATCAGACTTCATAGAAGGTATCACTCGGACGGAGAAGGACAAAGGCACTGTGTATGAGCTCACCTTCAAAGGTGACCAGAGCCGTGAGTTCAGGAAGCTGGTTCTGTTCCGTCCCTTTGGGCCGCTGATGAAGGTGAAGAACGAGAGGGTGGACACAGCTAACGTCCGCATCAATATCATAGTGCCCCTCTCCCAACGAGCCGACAAGTTCAGACACTTTATGCACAACTTCAGagaggtgtgtgtgcggCAGGACGGGCGTATCCACCTAACTGTGGTGTACTTTGGGAAGGACCAAATTAATGAAGTCAGGAGCACGCTGGAGAACACATCTAgGGAGATCAACTTTAAGAACTTCACTCTGCTCCAGCTGAATGAGGAGTTCTCCCGGGGGCGTGGCCTGGATGTGGGTGCCAGGGCGTGGAAAGGAGGGAACGTTCTCCTTTTCTTCTGTGATGTCGACATCTACTTCACCGCTGACTTCCTCAACACCTGCCGACTCAACACTCAACCTGGTAAAAAGGTGTTCTATCCTGTTCTGTTCAGCCAGTACAACCCAACCCTGATTTACGGTAACCACGACTACATCCCTCCAGTGGAGCAGCAACTGGTCATTAAAAAGGATACAGGATTCTGGAGAGACTTTGGCTTCGGAATGACATGCCAATACCGATCAGATTTCATCAACATAGGTGGTTTCGACGTGGACATCAAAGGCTGGGGCGGCGAGGACGTGCACCTTTACAGGAAATACCTTCACAGCAACCTGCTGGTGGTGCGGTCCCCATCTAGGGGCCTCTTCCACCTGTGGCATGAGAAGCGCTGCGCGGACGAGCTGCCCCCGGAACAGTACAGGATGTGCATGCAGTCCAAGGCCATGAACGAGGCCTCGCACGGCCAGCTGGGCATGCTCTTCTTCCGACACGAGATCGAGGCACACCTGCACAAGCAGAAACCCCAGAGGCTAAACCCTGCCAAGAAGACATGATGAAGACATGATGAGGGAGTCACACAGGACTCTAGACTACAGGAGGAGGGCATGACAGTATGGCAGTCAGAGACAGTGAGGGGGaaacaacaacagaacagagatcTATTGTTGTGAACTGATGACAACAATACTGACTCACTACAGAGGAAAAACACTCGATTTTATCCTCCGATGGCAAAATggatatataaaacacagctaaggcacctGTCGTATCTTGAAGATGTGagagcactgtaaaaacaacggTGAGAGTCAAAAGGAGCAGCAGAAAGACTTGACTGCTCCGCTGTATTTTGTTTAAAATCATGTGCCCCGTGTTGACTGACTGACAGCTGGTTTTGAGAATCATGATGTGGCATCTGCTGGTCTTTCTTGAAGGCTAGATAAAGAGTAGAACTAGATTTTTCTGTAGCCTATTAGAGACACCTTGTGGACTGGAAGAGAACAGCATGACTGAATGGAATGAGGATACTCTTAATCTGAAGTCATGTCAGCTGGTTACGCGACTCTCCTCAGAACTGATGATCAATCAATACATTAAAACAGGCATTACTGAGGGTTATGTAGAGAGACAATGGCAACAATGGAGGTACATGGAAGCTATTAGATATTCATTATTTCTCAAGCTCCACAGAATCAATATACAGATGTACTAACCTAATTTGATCACTCCTTTGTTGCTGATAATTTTCCTGCACTGCAGCAAATGCATATGGGCTTTGTGAGTTACATAAATTCACAGAAAACCCCAACTCTAGCCTGTTTACACCTGGTGCTAACATGGGTCCTTTgtgcacaatcagaatgtggacaaaaTCAGGACAAATTACGcaagttagaaccaggtataaacgagGTTAATAcacggttatattaacagtattgcacttttcatgtagcctacttttggccagtTGATAGCCaaaccaccgatcaagcaacattgtggactgctgcaggattattttgctgtgacaacacagatcaaattaagatcctacatctatagTGTACTGCTTTTTCACGAGTTTAACTAATCCTACAAGTGCTTTTATGTGCTTTTTTATCATCAACAAACAAAAGAGTGTAGTTTGAAGGGTCAAAATAAATATCGAGAATTTTTTGGGCAGTATTATGGTGTGCTGTTTGAGCACGCAGCTATGAGGGAGTCACGTTTGTCGTAAGAATattcggaccaaggtgcagcgtgatatggtttccacatgtttattaactgaaacacacaaaaacaatgaAGAATGAACGAAACGTGAAGACAATggcgtgctcacaggcaactacacataaacaagatcccacaaacacaggtgggaaaaataactacttaaatatgatccccaattagagacaacgattaccagctgcctctaattgggaatcatacaaaacaccaacatagaaaaataaactagaacacaacatggacatAGGTATACTAgatcaccccctagtcacgccctgacctactaaaCCATAGAGAAACTATGgcactctatggtcagggcgtgacagaggtaTAGGGAACATGTTATGGTCCTGAGAGAAAATATGGATACAGTGTCCAACATATTTCTCAATGttgttgatttgattttattaggatctcttttagtccccatttggactaatcttccaagagtccttaacatTAAATTATATTAAGAGATAAAACAAAGACTATCTACAATAGTCAAATTGTTTTGTGTATGGTATAACTGGGcaaataatatattataatagatagaCTACACTTTGATTCCATAATTAAGTTATAAACGCAGTGTTAAAATGGTAGAACGGTCTTCACCCTCTATCAGAAGTTTTATTGTTAGAAAAAAATAAAAGTCTTGCTCCAAAAATTCTTATATATTATTTAACAATGTGGTTATCTGTACTGATAATATGCCTACTCTTCCTTAGAAGCTTAAATGACGATGGCTTGACACAAGTCTAAATGACCTAAAGGAAGTTTAGAGGTAGTAGAATGCTTCCATGTCTATAGAGCAGTATAAGCTAGGTATGGGCCAGTATAGGCAGTCCATCCACAGAGCAATATAGGCCAGGGGATGGGAAGGTTAAGAAAAGGCCAGTATGAAAGTGTAAATTaagacaatctgaaatggttAGAAATGTAAAGTTAGTGGCAAAGTGCCTCTGATATTTGAAAGTGACACCTGGCTTTTACGTTATCCAGGTGGATTTCTACTGAGAGTTTTTCTTAGAGATGTAACCTATCGATGGCTAAGCGCAGTATTATAGATGAACACATTTTCACAGGCTTGACATTCACAGCGAGTGACAAAGACTTTATGCCATTTCACTTATTTGTCTTAAATGTCAGCTCTCAACAGTTTGTGTTAACTGTATATTGAGGTGTTTGATTACATTCCCCATGAGTATTTAAATCCCGTGACAGTAGTGGACTGTTTCACATGGAATAATTTATATTAACCTACATTTGTGTTGGATCACCAAAGCCTGTAAACAGAGTAAAGAAGACACACTTATTTTTGACATTTGTTTTATTGTTTCATGAAAGGATACTTCTTTCTGTTAATAATAAATATAACTTTCCTGA

Function

NR:

description
chondroitin sulfate N-acetylgalactosaminyltransferase 1-like isoform X1

GO: NA

KEGG:

id description
K00746 CSGALNACT1_2; chondroitin sulfate N-acetylgalactosaminyltransferase 1/2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622710.2 True 4937 mRNA 0.46 7 14120153 14155328

Neighbor

gene id symbol gene type direction distance location
plpp1a plpp1 coding downstream 11959 14083339 ~ 14108194 (-)
dhx29 dhx29 coding downstream 103600 13991357 ~ 14016553 (-)
LOC110537005 LOC106568400 coding downstream 233018 13811384 ~ 13887135 (-)
LOC110537004 LOC106568399 coding downstream 313249 13766381 ~ 13806904 (-)
LOC110537003 LOC106568398 coding downstream 363463 13733254 ~ 13756690 (-)
LOC110537014 LOC106568411 coding upstream 25075 14180403 ~ 14198027 (-)
zmp:0000001301 LOC106568410 coding upstream 42830 14198158 ~ 14213576 (-)
tdgf1 LOC106568419 coding upstream 94582 14249910 ~ 14252948 (-)
LOC110537020 LOC106568373 coding upstream 674293 14829621 ~ 14831545 (-)
c3ar1 c3ar1 coding upstream 714411 14869739 ~ 14875572 (-)
G1040292 NA non-coding downstream 41464 14070953 ~ 14078689 (-)
G1040283 NA non-coding downstream 96688 14023034 ~ 14023465 (-)
G1040282 NA non-coding downstream 97487 14021555 ~ 14022666 (-)
G1040094 NA non-coding downstream 133740 13986092 ~ 13986413 (-)
G1040090 NA non-coding downstream 136351 13983506 ~ 13983802 (-)
G1040383 NA non-coding upstream 56767 14212095 ~ 14242009 (-)
G1040424 NA non-coding upstream 136606 14291934 ~ 14292138 (-)
G1040442 NA non-coding upstream 163033 14318361 ~ 14318603 (-)
G1040479 NA non-coding upstream 186228 14341556 ~ 14341809 (-)
G1040494 NA non-coding upstream 209163 14364491 ~ 14364840 (-)
G1039504 NA other downstream 764358 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 797437 13321118 ~ 13324415 (-)
G1039364 NA other downstream 943710 13147658 ~ 13176443 (-)
G1039366 NA other downstream 967846 13151021 ~ 13152307 (-)
G1038943 NA other downstream 1398999 12720501 ~ 12721154 (-)
G1040300 NA other upstream 23330 14178658 ~ 14180141 (-)
G1040432 LOC106568413 other upstream 152272 14307600 ~ 14311052 (-)
G1042500 NA other upstream 1948835 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 2169635 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 2378289 16417638 ~ 16549073 (-)

Expression


Co-expression Network