Item | Value |
---|---|
gene id | LOC110537021 |
gene name | LOC106568367 |
gene type | coding |
species | rainbow trout (Oncorhynchus mykiss) |
category of species | economic fish |
Item | Value |
---|---|
chromosome id | NC_048576.1 |
NCBI id | CM023230.2 |
chromosome length | 102853256 |
location | 14896348 ~ 14946975 (-) |
genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
description |
---|
adenomatous polyposis coli protein-like isoform X2 |
id | name | namespace |
---|---|---|
GO:0090244 | Wnt signaling pathway involved in somitogenesis | biological_process |
GO:0061380 | superior colliculus development | biological_process |
GO:0001754 | eye photoreceptor cell differentiation | biological_process |
GO:0055001 | muscle cell development | biological_process |
GO:0031290 | retinal ganglion cell axon guidance | biological_process |
GO:0003146 | heart jogging | biological_process |
GO:0071599 | otic vesicle development | biological_process |
GO:0003157 | endocardium development | biological_process |
GO:0031017 | exocrine pancreas development | biological_process |
GO:0031018 | endocrine pancreas development | biological_process |
GO:0001501 | skeletal system development | biological_process |
GO:0006974 | cellular response to DNA damage stimulus | biological_process |
GO:0003170 | heart valve development | biological_process |
GO:0043065 | positive regulation of apoptotic process | biological_process |
GO:0090090 | negative regulation of canonical Wnt signaling pathway | biological_process |
GO:0007026 | negative regulation of microtubule depolymerization | biological_process |
GO:1900052 | regulation of retinoic acid biosynthetic process | biological_process |
GO:0045859 | regulation of protein kinase activity | biological_process |
GO:0007050 | cell cycle arrest | biological_process |
GO:0070365 | hepatocyte differentiation | biological_process |
GO:0007051 | spindle organization | biological_process |
GO:0035118 | embryonic pectoral fin morphogenesis | biological_process |
GO:0008285 | negative regulation of cell population proliferation | biological_process |
GO:0061031 | endodermal digestive tract morphogenesis | biological_process |
GO:0048920 | posterior lateral line neuromast primordium migration | biological_process |
GO:0044030 | regulation of DNA methylation | biological_process |
GO:0048384 | retinoic acid receptor signaling pathway | biological_process |
GO:0022006 | zona limitans intrathalamica formation | biological_process |
GO:0003306 | Wnt signaling pathway involved in heart development | biological_process |
GO:0060041 | retina development in camera-type eye | biological_process |
GO:0001947 | heart looping | biological_process |
GO:0030917 | midbrain-hindbrain boundary development | biological_process |
GO:0000281 | mitotic cytokinesis | biological_process |
GO:0000776 | kinetochore | cellular_component |
GO:0030426 | growth cone | cellular_component |
GO:0005813 | centrosome | cellular_component |
GO:0005634 | nucleus | cellular_component |
GO:0030877 | beta-catenin destruction complex | cellular_component |
GO:0016328 | lateral plasma membrane | cellular_component |
GO:0019887 | protein kinase regulator activity | molecular_function |
GO:0008013 | beta-catenin binding | molecular_function |
GO:0008017 | microtubule binding | molecular_function |
id | description |
---|---|
K02085 | APC; adenomatosis polyposis coli protein |
RNA id | representative | length | rna type | GC content | exon number | start site | end site |
---|---|---|---|---|---|---|---|
XM_021622735.2 | False | 9697 | mRNA | 0.48 | 16 | 14896348 | 14946975 |
XM_021622732.2 | False | 8495 | mRNA | 0.50 | 17 | 14897399 | 14935093 |
XM_021622730.2 | False | 8927 | mRNA | 0.50 | 16 | 14897399 | 14935321 |
XM_021622731.2 | False | 8527 | mRNA | 0.50 | 17 | 14897399 | 14936004 |
XM_021622733.2 | False | 8526 | mRNA | 0.50 | 16 | 14897399 | 14936078 |
XM_021622736.2 | True | 8643 | mRNA | 0.50 | 16 | 14897399 | 14946975 |
gene id | symbol | gene type | direction | distance | location |
---|---|---|---|---|---|
c3ar1 | c3ar1 | coding | downstream | 20776 | 14869739 ~ 14875572 (-) |
LOC110537020 | LOC106568373 | coding | downstream | 64803 | 14829621 ~ 14831545 (-) |
tdgf1 | LOC106568419 | coding | downstream | 643400 | 14249910 ~ 14252948 (-) |
zmp:0000001301 | LOC106568410 | coding | downstream | 682772 | 14198158 ~ 14213576 (-) |
LOC110537014 | LOC106568411 | coding | downstream | 698321 | 14180403 ~ 14198027 (-) |
LOC110537023 | NA | coding | upstream | 123097 | 15070072 ~ 15075473 (-) |
LOC110537026 | LOC106568365 | coding | upstream | 138942 | 15085917 ~ 15096696 (-) |
LOC110537025 | dab2 | coding | upstream | 152569 | 15099544 ~ 15114328 (-) |
LOC110537028 | LOC106568361 | coding | upstream | 205034 | 15152009 ~ 15154387 (-) |
LOC110536797 | LOC107675342 | coding | upstream | 390544 | 15337519 ~ 15339341 (-) |
G1041831 | NA | non-coding | downstream | 18812 | 14877244 ~ 14877536 (-) |
G1041138 | NA | non-coding | downstream | 35222 | 14860617 ~ 14861126 (-) |
G1041132 | NA | non-coding | downstream | 39450 | 14856671 ~ 14856898 (-) |
G1041131 | NA | non-coding | downstream | 40070 | 14856052 ~ 14856278 (-) |
G1041049 | NA | non-coding | downstream | 102160 | 14793947 ~ 14794188 (-) |
G1041866 | NA | non-coding | upstream | 1509 | 14948484 ~ 14948692 (-) |
G1041871 | NA | non-coding | upstream | 6774 | 14953749 ~ 14953986 (-) |
G1041895 | NA | non-coding | upstream | 45785 | 14992760 ~ 15038648 (-) |
G1041932 | LOC100136130 | non-coding | upstream | 106249 | 15053224 ~ 15138711 (-) |
G1040432 | LOC106568413 | other | downstream | 585296 | 14307600 ~ 14311052 (-) |
G1040300 | NA | other | downstream | 716207 | 14178658 ~ 14180141 (-) |
G1039504 | NA | other | downstream | 1540553 | 13355300 ~ 13355795 (-) |
LOC110536986 | LOC106568381 | other | downstream | 1573632 | 13321118 ~ 13324415 (-) |
G1039366 | NA | other | downstream | 1744041 | 13151021 ~ 13152307 (-) |
G1042500 | NA | other | upstream | 1157188 | 16104163 ~ 16104883 (-) |
LOC110537059 | LOC106568318 | other | upstream | 1377988 | 16324956 ~ 16328168 (-) |
LOC110537061 | LOC106568319 | other | upstream | 1586642 | 16417638 ~ 16549073 (-) |
LOC110537077 | LOC106568284 | other | upstream | 2118346 | 17065241 ~ 17068020 (-) |
G1044482 | NA | other | upstream | 2749154 | 17696129 ~ 17697105 (-) |