LOC110536797 (LOC107675342)


Basic Information

Item Value
gene id LOC110536797
gene name LOC107675342
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15337519 ~ 15339341 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110536797
ATGCAAGACTACATATCGaacctctctctcttctctgtgtctctcatgcCCATCCTCGTCCTAGGCCTGTGTGACCACACCAAGGTGTTCAAAGATGGCAGATGCCTGCTGACAGATGACAGTTTTGTCCTGGTGGGCTCCTTCTTGGCCTTCTTCGTCCCCCTCACCATAATGGTGGTAAGCTACTTGCTCACCATCAGCGCCCTGCAGACTGACGCTACCATCTGCCTGGACCAGCTGTTGTTCCGGCCCAAGTTAAGTGCCACCCTGACCCTGGGCTTCCTCCTTCGGGTTCTCACTCTCCTGCTCTTCTTCAGGCGTTCACTAAGCCGTGACACAGGAGGGGTTGGCAGGGCAGAAGGCATCCCAGCTTCTGGTCATGGTCTTCTTCCTGATCATGGTCATGTTTTGTCCCTTCGTCAtcaccaatgtgtgtgtgtgggggggggtgctgCTGAGAGTGTTTGTGTTGGTGGCTACCTCTCCTCAGCCTCTGGTATACACTCTGGTCAAAATACAGTGCAGCAGCATTCTCCTGCTACATAAGCTGTCAGTGGACAGTTCTGGTCTACTCAAGGTGGTGgctctcccatagacaccaatgcgatagcagctgggtctggtctacttag

Function

NR:

description
5-hydroxytryptamine receptor 2A

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110536797 True 632 mRNA 0.54 2 15337519 15339341

Neighbor

gene id symbol gene type direction distance location
LOC110537028 LOC106568361 coding downstream 183132 15152009 ~ 15154387 (-)
LOC110537025 dab2 coding downstream 223191 15099544 ~ 15114328 (-)
LOC110537026 LOC106568365 coding downstream 240823 15085917 ~ 15096696 (-)
LOC110537023 NA coding downstream 262046 15070072 ~ 15075473 (-)
LOC110537021 LOC106568367 coding downstream 390544 14896348 ~ 14946975 (-)
LOC110537035 LOC106568356 coding upstream 5579 15344920 ~ 15362787 (-)
LOC110537036 LOC106568354 coding upstream 25345 15364686 ~ 15381943 (-)
LOC110537037 LOC106568353 coding upstream 69650 15408991 ~ 15449896 (-)
prune2 LOC106568351 coding upstream 239734 15579075 ~ 15596603 (-)
LOC110537042 LOC106568350 coding upstream 260309 15599650 ~ 15611463 (-)
G1042075 NA non-coding downstream 7549 15329731 ~ 15329970 (-)
G1042074 LOC100135965 non-coding downstream 9433 15324011 ~ 15328086 (-)
G1042072 NA non-coding downstream 14459 15322771 ~ 15323060 (-)
G1042069 NA non-coding downstream 20438 15316872 ~ 15317081 (-)
G1041979 NA non-coding downstream 23750 15178565 ~ 15313769 (-)
G1042097 NA non-coding upstream 54553 15393894 ~ 15394565 (-)
G1042101 NA non-coding upstream 55426 15394767 ~ 15394966 (-)
G1042102 NA non-coding upstream 56749 15396090 ~ 15396297 (-)
G1042104 NA non-coding upstream 58918 15398259 ~ 15398522 (-)
G1042105 NA non-coding upstream 59361 15398702 ~ 15399066 (-)
G1040432 LOC106568413 other downstream 1026467 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1157378 14178658 ~ 14180141 (-)
G1039504 NA other downstream 1981724 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2014803 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2185212 13151021 ~ 13152307 (-)
G1042500 NA other upstream 764822 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 985622 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 1194276 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1725980 17065241 ~ 17068020 (-)
G1044482 NA other upstream 2356788 17696129 ~ 17697105 (-)

Expression


Co-expression Network