LOC110537047 (LOC106568344)


Basic Information

Item Value
gene id LOC110537047
gene name LOC106568344
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15708567 ~ 15718973 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622762.2
actcgggagccctactccgatttcagagcgcTCTCGTCTGGAGGAACCCTTGCTCTAGatgacatgaaaacagcctaactagGCCGAGTAAAATTgtcagtgaggtgttctctcatttgtgtctggaagtagctggcaagctagccaactttagcaagttagcttgggtgcttgactgccattgttaGGTCGGaacactcggatcaaccctaTTCCTCAGCCAGAGCATCCATTGTGCACTCCAAGAGCGAaccgctctgaatttacaaactggACAATATGACAACTCTCTGAATTTAAGAATGCCCAGAGTttactctggcactccagagtgaatttacgaacgtaCCCTAAATGTGAGCAATGAACAGCAAGCAGCATAGCCTAACCtttttcagtttcacaatttTGATTCTTGCTTTGTCAGTTACCTAAGGAGGGACATGTGTCAAATGCCTTGGCTTTATGACAGCGGTGAAATGGTCTCATTTCAGCAGCACTAACAAAGTTGAACTGCTGGTTATAGCAGTTTACATAGTGCCTTTTGGAAGGAGgaaactacagtatgtgtatCAGTACAGTATCACTGCAATCACCACGTGATATGATCGAGAAACCACGAAGGGACAGCTAGATGACAGTTTTGTGTTTCTTTTCATTTTCACTGTCTATACACTCTGTTTCTTTTCTCCTGATCATCTCGTCTGTCCATCTGCTGTTTAGGCCTGCTTAATTTACTGCACTGTGATATAAAGGCCTGTTTTGCATTTGCAACAACAAATGCAAATGATTACGTACAAATGCATGAGAACTGGACAAGATGGGACCCTATTATTCTGTTCtagccagGTGTGAGCTGTGACGCGTGTTTAAAAGGGAACTTCAGAGGGCGCCGGTACAAGTGTTTAATTTGCTACGACTACGACCTGTGCGCATCGTGCTACGAGAGCGGAGCTACCACAACGAGACACACGTCGGAGCACGCCATGCAGTGTATATTAACCAGGGTAGACTTTGACCTGTATTACGGCGGCGAGGCGTTCTCAGTAGAGCAGCCCCAGAGCTTTTCCTGTCCTTACTGTGGTAAAATGGGCTACACAGAGACATCCCTACAGGAGCATGTCACCTCAGACCATGCAGAGACTTCCACAGAGGTGATCTGTCCAATATGTGCTGCGTTGCCGGGCGGGGACCCCAATCACGTGACTGACGACTTTGCTGCTCATCTCACACTTGAACACAGAGCACCTAGAGACTTAGATGAGTCCAGTGGCGTCCGGCACGTGCGTCGGATGTTCCACCACGGTCGTGGGCTGGGCGGTCCTAGGGCACGCAGGACCAACATGCACTTTACTAGCAGCTCCACTGGGGGGCTCTCTTCCTCACATAGTTCCTCTTACTCCCCCAGTAACAGGGAAGCCATGGACCCTATAGCAGAGCTATTGTCTCAACTGTCGGGCGTGCGGCGCTCGGCGGGTGGCCAGCTCAACTCGTCGGGCCCGTCTGCGTCTCAGCTGCAGCAGCTACAGATGCAGCTGCAGCTGGAGCGCCAGCAGGCCCAGGCGGCCCGCCAGCAGCTGGAGACGGCCAGGAACGCCACACGACGCTCTAACCCCGGCGGCAACATCAGTGCCACCATCCCACCTCCCAGCGCCAACTCGGTTGGCGTGGCCGAGAGCAATCCCATGGCCTCCCACAGCTCCCAGTTCCTGCTCACACGTTTGAATGAGCCCAAGATGTCGGAGGCGGAGCGGCAGGCGCTGGAGGGTGAGCGCGCCGACCGCAGCCTGTTTGTCCAGGAGCTGCTGTTGAGCACGCTGATGCGCGAGGAGAGCTCCTCTTCGGACGAGGACGAGCGGCGAGACTTTGCCAGCTTTGGGGCCATGGGCTGCGTGGATATCATGCCTTTAGACGTGGCCCTGGAGAACCTCAACCTCAGGGAGAGCGGTACTGGCGGTTACAACAGCAGCTCTAGGAGCTCTAAGGagcctccaccacctcctctttGATGATATCCCAGCACCACGCAGACTTTGTCCTCTGTGCTGCCACTGCCAGTGACGGGCGGGCAGCAGGATCTTTTGGGGTTTGTTTTTTGGTGATTGTAATTTCAGGTCTGTCACCTTTGTTACATTTGTGTACAACCATAAAAAAGGAGAGCGGGAGCGATTGGGGAAAGTGCAAGTGGATGAGTGCACAGCGCTAAGTGAGCgagagattatatatatatatatatatatatctcaaatGTTGATAATCAGTTCTACACAACTAATTTTTTCCTTTAGCAGGTAAGCATTAGGTAGATGTGGCAgatctctcttcctgttctcatGCAAAATGATCTCCTTATAAATACCCCACATTCAAAACCTGAAGAGGAACCAGACACCCTATGGTGAAGCTGCTGTGTGTATTTATGACTTAACAAATAAAAAGTGCTTGGATGGTTAACCATAAACTACTGCATGAGGTTCTTTGCATCGTGCATGACTTTTAATGACCTCATCattaaaaagggagagagaaaatatcCCGACGCTTTCTCTCGCCAACCATTTTAAACGGTTACTTGAAACATGATTTGAGTTTTTCCGAAAAATGTGATATTGCAAAAAAAACTGACATGCTGAATAATTTAGgaactttttaaaacttttttgtttgaaatagaaaaacaacatattGGAATCTGCAGTAGCTTTAAAAAGAAAACAATGCAATGTGTTTATCTCTCAGCTCCGGTTGGTCCTTCCCTCCTTTGTGACATCGTCTGACTATAACATCAACTTGCTGCACTAACAGCAAAACTCAAGAGAAACTCGAGACATCTGCATTCACTTAGCAGATAAAATAATACAATACTAGGAGCAGAAAAACAAGATCTTGTCTCTGACATTTTTCCTAGCTGTTGATTGTTCTAATGAGAAGCTGTGTGTAACCACCAGATGTTGTTTCTAATTTATGCACCTGTACAGAAGAACTAGTCTCCCATTCTCATCGATCGCACTCtactcttctccatctctctgcttcTGTAGGCCCAGTTCATTTGTATTACTTTCTTTGAGGAAGGGGAGCGCGAGACTTTCCACATTGCAGGCATTGTTTTTTGTTCGACTGAAGAATGATAATTTTTTCTCAGCTAAGGATAGCACCTTCTATTTATTATTTTAGTTTCTCTGATTCTTTTAAGCCTTGTAATGAATCATACCACCTCCATGCCTATACTCTTATCCTCTGTAAAATACAATGAGATGTATATTGAATTTGTGCGTTAACTTTCATAATGGTTCTAGGATATGGGcagacttttttttatttttaatgtaaATTTAGAATACAATAAACTGCGCACAGCTTTTGATGAAACCAAGCCCCTCCCTCTT
>XM_021622760.2
TGTTTCTTCAGCATACTGCGAATTCTCTGTCTCAGTACTTCTTCGTGACAGCCAGGGAGGGGGAAGCACAGAACTGTAAGCTCAGGATCCATCTTAAAGAGAAAATACGAAATAGAAATCGCGTCCCAGGTTTATCTCTTAAAAGCTGTATATTTTCTGCGTGATCCGTGCTAGGGAGGCCGAGGAGGGGGCTGTGTCATCGTCTGTAGGATGTCCCGACATGAGGGTGTGAGCTGTGACGCGTGTTTAAAAGGGAACTTCAGAGGGCGCCGGTACAAGTGTTTAATTTGCTACGACTACGACCTGTGCGCATCGTGCTACGAGAGCGGAGCTACCACAACGAGACACACGTCGGAGCACGCCATGCAGTGTATATTAACCAGGGTAGACTTTGACCTGTATTACGGCGGCGAGGCGTTCTCAGTAGAGCAGCCCCAGAGCTTTTCCTGTCCTTACTGTGGTAAAATGGGCTACACAGAGACATCCCTACAGGAGCATGTCACCTCAGACCATGCAGAGACTTCCACAGAGGTGATCTGTCCAATATGTGCTGCGTTGCCGGGCGGGGACCCCAATCACGTGACTGACGACTTTGCTGCTCATCTCACACTTGAACACAGAGCACCTAGAGACTTAGATGAGTCCAGTGGCGTCCGGCACGTGCGTCGGATGTTCCACCACGGTCGTGGGCTGGGCGGTCCTAGGGCACGCAGGACCAACATGCACTTTACTAGCAGCTCCACTGGGGGGCTCTCTTCCTCACATAGTTCCTCTTACTCCCCCAGTAACAGGGAAGCCATGGACCCTATAGCAGAGCTATTGTCTCAACTGTCGGGCGTGCGGCGCTCGGCGGGTGGCCAGCTCAACTCGTCGGGCCCGTCTGCGTCTCAGCTGCAGCAGCTACAGATGCAGCTGCAGCTGGAGCGCCAGCAGGCCCAGGCGGCCCGCCAGCAGCTGGAGACGGCCAGGAACGCCACACGACGCTCTAACCCCGGCGGCAACATCAGTGCCACCATCCCACCTCCCAGCGCCAACTCGGTTGGCGTGGCCGAGAGCAATCCCATGGCCTCCCACAGCTCCCAGTTCCTGCTCACACGTTTGAATGAGCCCAAGATGTCGGAGGCGGAGCGGCAGGCGCTGGAGGGTGAGCGCGCCGACCGCAGCCTGTTTGTCCAGGAGCTGCTGTTGAGCACGCTGATGCGCGAGGAGAGCTCCTCTTCGGACGAGGACGAGCGGCGAGACTTTGCCAGCTTTGGGGCCATGGGCTGCGTGGATATCATGCCTTTAGACGTGGCCCTGGAGAACCTCAACCTCAGGGAGAGCGGTACTGGCGGTTACAACAGCAGCTCTAGGAGCTCTAAGGagcctccaccacctcctctttGATGATATCCCAGCACCACGCAGACTTTGTCCTCTGTGCTGCCACTGCCAGTGACGGGCGGGCAGCAGGATCTTTTGGGGTTTGTTTTTTGGTGATTGTAATTTCAGGTCTGTCACCTTTGTTACATTTGTGTACAACCATAAAAAAGGAGAGCGGGAGCGATTGGGGAAAGTGCAAGTGGATGAGTGCACAGCGCTAAGTGAGCgagagattatatatatatatatatatatatctcaaatGTTGATAATCAGTTCTACACAACTAATTTTTTCCTTTAGCAGGTAAGCATTAGGTAGATGTGGCAgatctctcttcctgttctcatGCAAAATGATCTCCTTATAAATACCCCACATTCAAAACCTGAAGAGGAACCAGACACCCTATGGTGAAGCTGCTGTGTGTATTTATGACTTAACAAATAAAAAGTGCTTGGATGGTTAACCATAAACTACTGCATGAGGTTCTTTGCATCGTGCATGACTTTTAATGACCTCATCattaaaaagggagagagaaaatatcCCGACGCTTTCTCTCGCCAACCATTTTAAACGGTTACTTGAAACATGATTTGAGTTTTTCCGAAAAATGTGATATTGCAAAAAAAACTGACATGCTGAATAATTTAGgaactttttaaaacttttttgtttgaaatagaaaaacaacatattGGAATCTGCAGTAGCTTTAAAAAGAAAACAATGCAATGTGTTTATCTCTCAGCTCCGGTTGGTCCTTCCCTCCTTTGTGACATCGTCTGACTATAACATCAACTTGCTGCACTAACAGCAAAACTCAAGAGAAACTCGAGACATCTGCATTCACTTAGCAGATAAAATAATACAATACTAGGAGCAGAAAAACAAGATCTTGTCTCTGACATTTTTCCTAGCTGTTGATTGTTCTAATGAGAAGCTGTGTGTAACCACCAGATGTTGTTTCTAATTTATGCACCTGTACAGAAGAACTAGTCTCCCATTCTCATCGATCGCACTCtactcttctccatctctctgcttcTGTAGGCCCAGTTCATTTGTATTACTTTCTTTGAGGAAGGGGAGCGCGAGACTTTCCACATTGCAGGCATTGTTTTTTGTTCGACTGAAGAATGATAATTTTTTCTCAGCTAAGGATAGCACCTTCTATTTATTATTTTAGTTTCTCTGATTCTTTTAAGCCTTGTAATGAATCATACCACCTCCATGCCTATACTCTTATCCTCTGTAAAATACAATGAGATGTATATTGAATTTGTGCGTTAACTTTCATAATGGTTCTAGGATATGGGcagacttttttttatttttaatgtaaATTTAGAATACAATAAACTGCGCACAGCTTTTGATGAAACCAAGCCCCTCCCTCTT

Function

NR:

description
E3 ubiquitin-protein ligase KCMF1-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG:

id description
K22376 KCMF1, FIGC; E3 ubiquitin-protein ligase KCMF1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622762.2 False 3389 mRNA 0.47 7 15708567 15717188
XM_021622760.2 True 2766 mRNA 0.48 7 15708567 15718973

Neighbor

gene id symbol gene type direction distance location
LOC110537046 NA coding downstream 2170 15685263 ~ 15706397 (-)
LOC110536798 LOC106568347 coding downstream 49607 15646860 ~ 15658960 (-)
LOC110537041 LOC106568348 coding downstream 63879 15614458 ~ 15644688 (-)
LOC110537042 LOC106568350 coding downstream 97104 15599650 ~ 15611463 (-)
prune2 LOC106568351 coding downstream 111964 15579075 ~ 15596603 (-)
LOC110537048 LOC106568343 coding upstream 3884 15722857 ~ 15757869 (-)
LOC110539118 NA coding upstream 41291 15760264 ~ 15771751 (-)
LOC110537049 LOC106568342 coding upstream 63658 15782631 ~ 15793831 (-)
LOC110536799 LOC106568341 coding upstream 87702 15806675 ~ 15857024 (-)
LOC110537052 LOC106568339 coding upstream 160446 15879419 ~ 15920255 (-)
G1042179 NA non-coding downstream 164570 15511196 ~ 15543997 (-)
G1042175 NA non-coding downstream 203698 15504369 ~ 15504869 (-)
G1042150 NA non-coding downstream 210615 15497500 ~ 15497952 (-)
G1042121 NA non-coding downstream 265405 15442857 ~ 15443162 (-)
G1042116 NA non-coding downstream 272528 15435545 ~ 15436039 (-)
G1042167 NA non-coding upstream 125748 15844721 ~ 15865647 (-)
G1042386 NA non-coding upstream 256880 15975853 ~ 16004742 (-)
G1042409 NA non-coding upstream 270937 15989910 ~ 15994023 (-)
G1042425 NA non-coding upstream 293254 16012227 ~ 16012762 (-)
G1042426 NA non-coding upstream 294434 16013407 ~ 16013704 (-)
G1040432 LOC106568413 other downstream 1397515 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1528426 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2352772 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2385851 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2556260 13151021 ~ 13152307 (-)
G1042500 NA other upstream 385190 16104163 ~ 16104883 (-)
LOC110537059 LOC106568318 other upstream 605990 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 other upstream 814644 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1346348 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1977156 17696129 ~ 17697105 (-)

Expression


Co-expression Network