LOC110537049 (LOC106568342)


Basic Information

Item Value
gene id LOC110537049
gene name LOC106568342
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15782631 ~ 15793831 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622764.2
TGATATGATCAGCTGACAGTTCATTCGTGTTGTTATTGTGCTCGCTATCTAGCGTATATAACGAAGTAATTTAGGGTTGCTAGCTTGCTAGCGGTCGAAATTGGTGTTAATACTGTGGTTCATTTTAATTTTCAATGTGTTTCTCGTAGATTTAAAAAGTGGTATAGTTACACATATTTATTTGACTAACGTTAGTCGTGATATCAAAGGAGCTGTCACTCCTATTTAGCTCTCGTGCAGGATGACTTCTCGGCGACCGGACAATTTTGACGGTTTAGGTTACAGAGGTATTGAGGATCCTGCTTACAGTGGGGGCTACAGTGGAAGGTCATTTAATAATTCTTCTAGTGTGGACCTGCAGAATTGGGTAACAACACCGCCAGATATTCCAGGTAGCCGAAATTTACATTTTGGTGAACGCACGCCCCAATTTGAGGCGGCCCCTGCAGCACCTGGTGCTGAAGATACTCTGCCCACAGCTCCTCCATCCGAGCAGTTGAACAGATTTGCTGGATTTGGTATCGGGCTTGCAAGTCTCTTTACTGAAAATGTCCTGGCTCACCCTTGCATTGTGTTTCGTCGTCAGTGCCAGGTCAATTATCACGCCAGGTGCTACCATCTGTCCCCATTGACTGCTATCAGTGTGATGTATAATGTCACCAAGAGTCAGGGTCCTAAGGCCTTATGGAAAGGAATGGGCAGCACCTTTGTGGTACAGGGAGTCACATTGGGAACAGAAGGCATCATAAGTGAATGCACTCCACTACCACGAGAACTCTCCCACAAATGGAACCCCAAGCAAGTTATTGGGCATTTGGCTCTGAAAGGTTTGACCTGTGTGGTTGCCATGCCATTTTACTCAGCAAGCCTCATTGAaactgtgcagAGTGAGATCATCCGGGACAACCCTGGAATCCTGGACTGTGTGAAGGAGGGTGTGGGCCGGGTCATGGGAATGGGCGTCCCCCACAGCAAGCGCCTGCTGCCACTATGGGGTCTCATGCTCCCCACCATGCTCCACGGGGTCCTCCACTATGTGGTGAGCTCCACCGTGCAGAGGCTGGTTCTCTTCCTCCTGCGCCGGAAGAGTCCGGCCAAGCAGCCCGTGGACGGCTCGGAGACGGTCCAGACCATGCTGGATGCTTACTTCCCAGAACTCATGGCTAGTTTTGTGGCCAGTCTGTGTGCCGATGTCCTCCTCTATCCGCTGGAGATGGTGATGCACAGGCTCCACATCCAGGGCACGCGCACCATCATCGACAACACAGACCTGGGCTTTGAGGTCCTGCCCATCAACACGCAGTATGAAGGCATCTGGGACTGTGTAAATGTGATCCGGCGAGAGGAGGGAGCCCTGGGATTCTACAAAGGCTTCGGCTCCATCGTGGTGCAGTACTCGCTACACGCCGCCGTACTGCAGATCACCAAAGTGATCTATTCCACCTTGCTGCAAAACGCTTAAAGAAAAACAATGCAAAATATTCCTAAATGTTAGTTTGACTTGGTGGTTGCCCCTTTGAAACCCTGTTTTTTTTCATGCCAGTCTGGGTTGTGCTCATTCTGGAAAAGGTTGTCATTTTCAAAAAAACTAAAATACCAAAAGATGGCTTGATTATTTTTTCTGTCCAGAAGCACATTTCGAGTGTTTTGCCGAGAATGGTGTCCCTAATTGTCAGCACTTCCACTGTGTCACAAAGCACTGAATAATAAATCATATGTACTATGATACATGGAATCAATAAATATCCCCAATGGTCATA

Function

NR:

description
solute carrier family 25 member 46-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K03454 SLC25A46; solute carrier family 25, member 46

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622764.2 True 1760 mRNA 0.48 8 15782631 15793831

Neighbor

gene id symbol gene type direction distance location
LOC110539118 NA coding downstream 10880 15760264 ~ 15771751 (-)
LOC110537048 LOC106568343 coding downstream 24762 15722857 ~ 15757869 (-)
LOC110537047 LOC106568344 coding downstream 63658 15708567 ~ 15718973 (-)
LOC110537046 NA coding downstream 76234 15685263 ~ 15706397 (-)
LOC110536798 LOC106568347 coding downstream 123671 15646860 ~ 15658960 (-)
LOC110536799 LOC106568341 coding upstream 12844 15806675 ~ 15857024 (-)
LOC110537052 LOC106568339 coding upstream 85588 15879419 ~ 15920255 (-)
mzt2b LOC106568316 coding upstream 513526 16307357 ~ 16312346 (-)
ppwd1 ppwd1 coding upstream 526597 16320428 ~ 16324762 (-)
LOC110537059 LOC106568318 coding upstream 531125 16324956 ~ 16328168 (-)
G1042179 NA non-coding downstream 238634 15511196 ~ 15543997 (-)
G1042175 NA non-coding downstream 277762 15504369 ~ 15504869 (-)
G1042150 NA non-coding downstream 284679 15497500 ~ 15497952 (-)
G1042121 NA non-coding downstream 339469 15442857 ~ 15443162 (-)
G1042116 NA non-coding downstream 346592 15435545 ~ 15436039 (-)
G1042167 NA non-coding upstream 50890 15844721 ~ 15865647 (-)
G1042386 NA non-coding upstream 182022 15975853 ~ 16004742 (-)
G1042409 NA non-coding upstream 196079 15989910 ~ 15994023 (-)
G1042425 NA non-coding upstream 218396 16012227 ~ 16012762 (-)
G1042426 NA non-coding upstream 219576 16013407 ~ 16013704 (-)
G1040432 LOC106568413 other downstream 1471579 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1602490 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2426836 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2459915 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2630324 13151021 ~ 13152307 (-)
G1042500 NA other upstream 310332 16104163 ~ 16104883 (-)
LOC110537061 LOC106568319 other upstream 739786 16417638 ~ 16549073 (-)
LOC110537077 LOC106568284 other upstream 1271490 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1902298 17696129 ~ 17697105 (-)

Expression


Co-expression Network