LOC110536799 (LOC106568341)


Basic Information

Item Value
gene id LOC110536799
gene name LOC106568341
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 15806675 ~ 15857024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036937026.1
ATTTGTGTCGTTTTCAACTTGTTTGCCTCTAATATTACAATCATGAGGGAGTAAGGAATTAATATTTGTCGGTGCATGGAGCTTGTTCATTTCCACAAACGCTCCTGATTTTTCCAATGTTATGGTGTCACATCTGGAACACTTTCTCTCTTTTTGAATTCCAAATGTTGAAAATATGAACGAGATCATGTAGTAGTGAAGCTGGCATTTGGAAAGCCGTTAACATCAGGACCGGGTGCTGAACATGTCCATGCAGCTGTTTTCACAAGGTGTCTAAATGAGTGCTTTCTGGAGTTAATGGCCAACTTTTCGCTACACCAATGAATTATTGGAGTGGAGACGGATTTCTGGAAGATGCAATAGCTGAATATGATAGGAACTAGGAAGGGCAATGAATGCAAACCTATGGATTTGGAAACGTTCCATACGCGTTGTGCTCGCTCTGGTCTAAAAACTCATCCCCCACTTTACCTGTGCGTCCCAAATGAAAAAAGTTGTGAGTCGGTAGGCGGCGCACGTTCACACCTATGTTTTTCACTTCCTTACTTCATTTGAACAGAAAACAAATGCAGGAATGAGACGGGGTTGTCGGCACTGGCCAACACGATCTACTGAATCACAACTATTTCGCAGTGAAACTTCGCGACTGGGACGCAGTATCTTGTTCCAGCCATGATTCAAGCTACCTTTGGGTGACATACCCAGCTTTTTAAAGCTTGTTGTTCATAGAAGGAGTGAATGTGGACAATTATGTTAGTTCCGTCCTAACACACTAAAGAAGAATGAATAACTATTTTGGGGGGGAATAGCATTAGATTTTTCTGATCCTCACCGCAGAGTCAAGACATCGATCATTCCCTGAGGGTGATCTACATAACTATAGGTTACATTGCGGTCAGTCAATGTGATCAGCTTCGATTCACCTGGCAGTTTCGATTGTAAATTATGATGAAGCTCAGTCGGCAATTCACTGTTTTTGGAAGTGCCATATTCTGTGTTGTTATCTTCTCATTGTACCTGATGCTGGATCACCTGCAATTAGACCATACAAAAAGTCCAAACAACGGTGGGGATAAATTGCAAAATGGCCAGTTGTCCATCCTGCAGGATAAGATTGACCGCTTGGAGAGACTACTGTCAGAGAACAATGAGATCATAGCCAACATCAGGGACTCTGTGATCAATCTGAAGGAGTCGGTCAAGGATGGCCGTGGGGGTCTTGACGGCGGGAACATGAGCCAAGGGCCCTATCTAGAACTGCTGGCTTCGCCTCCACTGGTCCTCCCTATTGACTCACAAGACTGTCAGTTTGCGACAAGGGAGTTCTCCAAGCCAGCAGATGGGGTGCAGtTGCTAGATGTGTATGACCTCCTGACCTTTGACAACCATGATGGGGGAGTGTGGAAACAAGGCTTTGATATCACCTACCAGGAGAATGAATGGGACAGCGAGCCACTGCAAGTCTTTGTTGTGCCCCACTCACACAATGATCCTGGATGGCTGAAGACGTTTGACGACTACTACCGGGACCAGACCCAGCACATCCTGAACAACATAGTAGTGAAACTCCATGAGGACAGCCGCAGGAAAATGATCTGGTCCGAGATCTCATACTTCTCCAAGTGGTGGGACAACATCGACAACCAGAAGAGAGACGCTGTCAAGagTCTGTTTGAGCAAGGCCAGTTGGAGATCACAACGGGAGGCTGGGTGATGCCTGATGAAGCCAACTCGCATTACTTTGCATTAATTGACCAGCTATTGGAGGGACACCAATGGTTGGAGAGAAATGTGGGAGTGAAACCCCAGACGGGCTGGGCTGTGGATCCGTTTGGCCACTCCCCTACCCAGGCGTACCTGTTGAAACAGGCTGGCCTGGCCAACATGCTCATCCAGAGGGTGCACTACTCCGTCAAGAAACACTTTGCCAGTCAGAAGACCCTGGAGTTCTTCTGGAGACAGAACTGGGACCCAGCCTCCAGCACGGACATTCTATGCCACATGATGCCCTTCTACAGTTATGATGTTCCCCACACGTGTGGTCCCGACCCCAAGATCTGCTGCCAGTTTGACTTCAAAAGACTTCCTGGTGGGCGGGTCAGCTGTCCCTGGAGGGTCCCCCCTCAGCCAATCACGGATGGAAACGTACAACAGAGGGTTCAGATGCTGCTGGACCAGTACAGGAAGAAGTCCAAGCTGTTCCGAACCAAGGTGGTGATGGTCCCCCTAGGGGACGACTTCCGCTATGCAGAGGCCTTGGAGTGGGACCAGCAGTTCCAGAACTACCAGAAGCTCTTTGACTACATGAACTCTCATCCAGAACTACACGTCAAGGCTCAGTTCGGCACCATCACGGATTACTTCAACGCTCTTCGTAAATCGGCCATAGACCCCGGTCACGCTAGTGCCTCTTTACCGGTGGTCAGCGGCGACTTCTTTACCTACGCAGACCGAGATGACCATTACTGGAGCGGCTACTTCACCTCCCGACCCTTCTACAAACGCCTAGACCGCGTGCTGGAGTCACACCTCAGGGCAGCTGAGATCCTTTACTCCCTGACCCTGGCTAATATTCAGAGGTTTGGGAAGCTGAATGATTTCCCAGCTGTGGAGAACAACAGACTGCTCACTGAAGCCAGGAGGAACCTGGGCCTGTTCCAGCATCATGACGCCATCACAGGCACCGGCAAGGACATGGTAGTGATCGACTACGGTACCAGGTTGTTTCATTCCATTTTGAATTTGAACCAAGTGATTGTCAACTCCGCACACTGGCTGGTGTTAAAGGACAAAAGTGCATACAGTCACAATCCGTCAAAAGCCTTTCTTCAAATGGATGACATCCAGCCTTCTCAAGATGCCCTGCCTCAAAAAAACGTTCTGAAAATCAGCTCACAGCCTAGGTCTGTGGTCGTCTACAACCCCACGGAGCAGGACCGCACGTCAGTGGTGACCGTGTACGTGAACACGCCCCACGTGTGTGTGATCACAGACCACGGTCACCCCGTCCCCGCTCAGGTTAGCGCGGTCTGGGACGACTCCACCACAGCTTCCACAGAGGCCTTCCAGTTGTCCTTCGTAGCTCAGGTGCCAGCGCTGGGTCTTGGGCTGTACCAGTTGAGTACGGCTGTGAGCGGCGGGGCGGAGACGGCAGAGTATGTTTTCCTCAGGCAAGGCGGCGAACTATCCGTCAACATGAAGCACTTCACCGTCAACATCCCCCAGGACGCCTCCACCCCCCTCAGCATCCACAACCCCCACATCCAGATCTGGAGCTCCCCCACCACCGGCCTGATGGAGAGATTGAAGCTGAAAGAGAACGGCTCAGAACACCAGATCAAGGTGGAGTTTGCATGGTACGGCACAACCAGCAACCGAGATAAAAGCGGAGCCTACTTGTTCCTGCCCGACGGGGAAGCCAAGatgTACTCTCCCGCCCGGTCTCCAGTGATACGGGTAACCAAAGGTTCTGTGTTCTCTGAAATCACCACTACCTTCGATCACGTGACACACACTCTACGCCTGTATAACGTTCAAGgtgtggaGGGCCAGGCAGTGGAGATCTGTAACTTGGTAGATATAAGGAGGGAGTTCAACCATGAAATTGCAATGAGGTTAGCATCAGATGTGGACAGCAAGGATCGATTCTTCACAGACCTCAATGGATTCCAGATACAGCCCAGAAGAACCATGGCCAAGCTTCCCCTTCAAGCCAACTTCTATCCCATGACCAGCATGGCCTACATCCAGGACCCTGGTACCAGACTGACCCTGCTCACTGCACAGTCTCTGGGCTCCGCCAGCCTTGTGAGTGGCCAGTTGGAGGTGATTATGGATCGTCGGCTGAACCAGGATGATAACCGCGGGCTGGGCCAGGGTGTCCTGGACAACAAAGTTACCCCCAGCACTTTCCGCCTGCTCCTGGAGAAGAGGGCCAAGACCGATGGGGGGGAGAAACCCTCACCCCTCAGCTACCCGTCTCTGCTGAGTCACGTGTCGTCGTTGTACCTGAACCACCCTCTGATCTCCATGGCTGTCAGCACGGAGGCACAGTCCCTGTCCTTGTCCGCCTTCACCCCGCTGGCCTCATCGCTGCCCTGTGACATCCACTTGGTCAATCTACGCAGCATACAGTCCAAGGAGGACGGGGGTGGTCCGTCGGACGAGGCGGCTTTGATTCTGCACAGAAAAGGCTTTGACTGCGCCTTCTCCAATAGGAACACAGGGCTACTGTGTGCCACCACGCAGGGGAAGATCCACACGGAGAAGCTGTTTTCAGAACTGAGATTCCAGAGCATCATCCCCGTATCCCTGACTCTGATGCATACGACTGAGGGAGGGTCGAGCAAAGAGGAAATCAGACTGAAACCAATGGAGATCAGCACATACCGCGTGCAGCTGACATGACAGCTGGCCAGAGAGCCTAGTGCCTAGTCTGCCACGGCACATGCCCAAAATCTGGCCTCTGTTCCTGTGCCGAAAAACATTGTCAGCGAGGCTATGCAGAAGCCTAGGGACATAGTACATCCTTGGAACAGacggaaggagggaaagaggaagagagaaagaaggagagagggaggaggattaggaaggagggaggaggggaagaaaggaggagaaggaaatGGAACTTGATTAAGCTTCATTTTAAAAGTGCAGTATGATATTGTTTGAATCCAGTATCCCTAGTTATCCTGCAGTTTCAGGTTCTGTATGTGTTGTGAAGGTTTGTGTTGCAATTTCACTTGAACTCACTCTACTGAGAAGACCACAGGTCCACATTTCCTTTTCCACTAATATGATTTTGTACAATGTGATTCCTTGTCTTGTTTTACCAAGGTATGGTTTCAATCATAGTGAATATTGCTTAATGTCCTTGGCATGCCGAAAAAAAGATTTGAACGACAACTGattctaaatatata

Function

NR:

description
alpha-mannosidase 2-like

GO:

id name namespace
GO:0006013 mannose metabolic process biological_process
GO:0004559 alpha-mannosidase activity molecular_function
GO:0030246 carbohydrate binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K01231 MAN2; alpha-mannosidase II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036937026.1 True 4928 mRNA 0.50 22 15806675 15857024

Neighbor

gene id symbol gene type direction distance location
LOC110537049 LOC106568342 coding downstream 12844 15782631 ~ 15793831 (-)
LOC110539118 NA coding downstream 34924 15760264 ~ 15771751 (-)
LOC110537048 LOC106568343 coding downstream 48806 15722857 ~ 15757869 (-)
LOC110537047 LOC106568344 coding downstream 87702 15708567 ~ 15718973 (-)
LOC110537046 NA coding downstream 100278 15685263 ~ 15706397 (-)
LOC110537052 LOC106568339 coding upstream 22395 15879419 ~ 15920255 (-)
mzt2b LOC106568316 coding upstream 450333 16307357 ~ 16312346 (-)
ppwd1 ppwd1 coding upstream 463404 16320428 ~ 16324762 (-)
LOC110537059 LOC106568318 coding upstream 467932 16324956 ~ 16328168 (-)
LOC110537061 LOC106568319 coding upstream 560614 16417638 ~ 16549073 (-)
G1042179 NA non-coding downstream 262678 15511196 ~ 15543997 (-)
G1042175 NA non-coding downstream 301806 15504369 ~ 15504869 (-)
G1042150 NA non-coding downstream 308723 15497500 ~ 15497952 (-)
G1042121 NA non-coding downstream 363513 15442857 ~ 15443162 (-)
G1042116 NA non-coding downstream 370636 15435545 ~ 15436039 (-)
G1042386 NA non-coding upstream 118829 15975853 ~ 16004742 (-)
G1042409 NA non-coding upstream 132886 15989910 ~ 15994023 (-)
G1042425 NA non-coding upstream 155203 16012227 ~ 16012762 (-)
G1042426 NA non-coding upstream 156383 16013407 ~ 16013704 (-)
G1042428 NA non-coding upstream 160493 16017517 ~ 16017749 (-)
G1040432 LOC106568413 other downstream 1495623 14307600 ~ 14311052 (-)
G1040300 NA other downstream 1626534 14178658 ~ 14180141 (-)
G1039504 NA other downstream 2450880 13355300 ~ 13355795 (-)
LOC110536986 LOC106568381 other downstream 2483959 13321118 ~ 13324415 (-)
G1039366 NA other downstream 2654368 13151021 ~ 13152307 (-)
G1042500 NA other upstream 247139 16104163 ~ 16104883 (-)
LOC110537077 LOC106568284 other upstream 1208297 17065241 ~ 17068020 (-)
G1044482 NA other upstream 1839105 17696129 ~ 17697105 (-)

Expression


Co-expression Network