LOC100305243 (LOC106562364)


Basic Information

Item Value
gene id LOC100305243
gene name LOC106562364
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 16634735 ~ 16638951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001165148.2
AGTGCAGCAGAAGTAGTTAATGTGTAACTACAGGGAGGGGCAGCGCTGTGTGGAACCTGTGTCTGTATCTGCCTGTTCGCCTGTGTCTCAATCTACAGCTGTCTGAAGCATACTTTACTTGTCTCTACTTTATTTACTATGCTAGTAATTCGTCTGGATAATACATCTTTGTGAAACATTTACCCTCTGAAGTGGAGTAGTTTGTGGATAAATTAACTTGTTCTGACATGGCTGACTACAGTTCTCAACAGCCAGCCTCCTCTAAGATGGACTCAGTGCAGGGCCAAGTCAATGAAGTTAAAGTTATACTCAAAGACaacatcaacaaagtactggagaggggagagagattagaTGACTTGGTTGACAAGACACATGACCTACAAGCAACCGCAGACTCCTTTCAGAGGACATCCACGCGGGTAGCCCGGAAGTACTGGTGGAAGAACGCCAAGATGATGATCATCATTGGAGTGATAGTTCtgatcatcctcatcctcatcatcctGTTTGCTACAGGTGTCATCCCCAGTTAAATTGCCTCACAGACTCCTACAGTACTACATTCTCGCTAAAAGGAATAGGATGAACCACAATCACCAACAGTCATGTTTTGAATTTGATGAAACTGTGGTTTCATTCTGGTCTTCTCCCCAAGGCTCAAGGTGGATTATGTATAGTATCGTGACAAAATATAACATTTCACATTATGACTTCTGT
>TU1188546
ACCTGTGTCTGTATCTGCCTGTTCGCCTGTGTCTCAATCTACAGCTGTCTGAAGCATACTTTACTTGTCTCTACTTTATTTACTATGCTAGTAATTCGTCTGGATAATACATCTTTGTGAAACATTTACCCTCTGAAGTGGAGTAGTTTGTGGATAAATTAACTTGTTCTGACATGGCTGACTACAGTTCTCAACAGCCAGCCTCCTCTAAGATGGACTCAGTGCAGGGCCAAGTCAATGAAGTTAAAGTTATACTCAAAGACaacatcaacaaagtactggagaggggagagagattagaTGACTTGGTTGACAAGACACATGACCTACAAGCAACCGCAGACTCCTTTCAGAGGACATCCACGCGGGTAGCCCGGAAGTACTGGTGGAAGAACGCCAAGATGATGATCATCATTGGAGTGATAGTTCtgatcatcctcatcctcatcatcctGTTTGCTACAGGTGTCATCCCCAGTTAAATTGCCTCACAGACTCCTACAGTACTACATTCTCGCTAAAAGGAATAGGATGAACCACAATCACCAACAGTCATGTTTTGAATTTGATGAAACTGTGGTTTCATTCTGGTCTTCTCCCCAAGGCTCAAGGTGGATTATGTATAGTATCGTGACAAAATATAACATTTCACATTATGACTTCTGTAAATAAGCGTCCTGGAAtttgtttgattgtttttagATTATATCTGTTAATTTGATGTTTAATAACATACATCTCATCATTTTTGTAGATAGATTTGATTGTGTATTTTTGTCCCAAGAGAAACATTACAGGTAAGGAGCCTCTTCCCACAGCATTAGGGTTCATTGAATGCTTTATATTTgtgcttaaaggggcaatctgcagttgctacatacattttctgATTTATAAGTTAGTGAtttatacccattgattcttgaagaatataacttctaaatgcctcatgagcttagttcaactgtcgtaccccatcagaacccaaaatattagcttgttttacttcaatgtttgtaaacaaagtaaatgtaaacaaacactatatccTCAAACCATGGTTAAAACTACAAATGCTAGATCATGGATAGTCAGTCCTTTCATCCATGGCACCGTCTATGAATTTGAGCAGTTACATATCTCCAACCCCATCCCTCAACTTTTAACCGAAACAGAGGCGGGGAgtcgctttgttattgtttcaactgctgatttaCTGCTTTAGAAATGGTGGCCACAATAGTTCACTTCAGTATACAGCTACACTCCACTAGCAATATAATACTGTCCAAGGGCAAAGCTTAATGTAACAAACAGTTCACACTGTAAAAAAACAATCCATTTCAATTTCAGAtacgtttttttatttaaatgttttgatGATTTCTGAATGTTCTATATTTCTGTGTACCATGTCAAATATATATTAACAAAATGTTTACTTGTGATAACTGCGATAAAGGATGTAGATTCATTTAAGGGCCCATTTGCATTTGCTTTTGACCGCAATATAAATCATTTATTTTCTGGCCCTGACCAATCCAATTTTATTTATCGAAGACAAATTTCCTCCTCAGGGACAATTAAGTATCCTAGTCCTATTTGGGTTTCAATAATGGTAATTTATGCCTTAACAAAAAAGCAATTTACATAGAATATTACACACATTTAACAAAAGGGATAACACTGAGCGTAAGTGAACAATCAACTCTTAAATATAATTCTGCATATTTTCCTTTCACACAGTGTAACTCAATACAAGACGAATAGGAAACTTTTAAAAGCTTTGCAAGAAGAAACAACGAAATACAACACTGAACATAAATTCAATGTGCGTAGATCAACTGAATACTCTGACTGTGTCCTGTCTCAAGCCGTCCATAATAAAGGAAACTCTTGACTGAAACCTGTCACTTCGTCTGCCAACGCTCCTTCACAAGATATCCTTCAATCTTCCATCCTGAAAAAGACAAAACAAGTCAAACTGTTAATGATGAAGGTTACTACTAGTAGGGCTACAACTAAATGTCAAAGGAATCCCGTCTTTACCATTTCCATTAAgaaaacacaatacaatagatAAAAATATGTCTTACAATTAAGAATTAAAAACAAGTTAGTCCATAAGCTAGAAATCCTGAAGTGTGACAAATTAAAGAGTTCAAAGCCCAAATACAAAACCAATGAGTAAAGCCTTCTATTGGTCAAAAAGATACACATTAAAGAAAGCATTACATGCAAATTTCCAGGAAACGTAGAGATACTTTGATACTTTCTCAAAAGGTTAAAAAGAGAATTTTGTTAGAGGAAAATTAACGTTTAAAGGAGAAGTTTTCCCACCGCTGTCAGTAACACAAGCAAACAATACAAGTACAAAAATAACGCACTTCTCCAACGCAGTAGCATCCAAGTACAAACCAGGTTTTAGCTCATGGACTACTGGCTATTACTGCTACAAGAGCTAAATAAAGAAAAGCAAGAATTACAGGTATGATTAGGAATGAAAAAGACACTGGAAAGTCCAGAGAAAGCCGTGTCCTTTGAAAAGTAAATAGTTATTTTCTCAGTATCATGTTGTAATTTACCATTACTTGACGGGAGAGTAAGGGCCTGTAAAAAATGGCATTAAAATTACATAATTTGTATTTAAGTTTTAcattacaaaaaaacacattacagaaattaaacaaatgaaaataaaaaaagtggACAAAGCCGGACATGTCCCACTTAGTTTTTATTTACAATGCTGAGACAGGATGTTGGAAGACCATACCAAATGGCAGCATTCGAGAGTGTACGCCTCTCGTACCCGGTCCGCATTGAGCGGGCCAGAGAGTACCGGGGAGGTCAGCTCATGGCCTGCAAGGAAGCTCCGCTGGCAGGTACAAACAAGGTATATGTCAGAGTTAGGAGACAACATTAttattttctctctttcactctcttttccCTTGTAAATCCTTAACTCTTGGTATCCATTTTactgtagtaatagtagtactataCCTGTTAACTTTACAGTTACAAAATGGCTCATAAGAGGCAGCAGAAATAATTCACCAAAAAAAAGACTGTAGCCTCTATGTTAAGACTACTGTAAAGCACTTTTCAGGTGCTGTGAAAAACTATAAAGAGAAAAACATTATGagggtttattattattattatacagaGGTCGATACATTGCACTTTATCTAGGTTTGTTGTAGGTGACTTATAAAACATACCTGTCTGTGGGTGTGGTACTTCTGTTACATCAATATGGCTTGTAATTGTTTTGGTGACCACCTCGCCTGGGGGACTTCCCATAACCACCCTGCTGGTCTGCTGattggacacaaacacacacagaaaaaaacaATTATATGAGTAAATGATAGTTCTAGCTCTGAGATAAGATAGTAGTACATATTCAAAA

Function

NR:

description
vesicle-associated membrane protein 8

GO:

id name namespace
GO:0016192 vesicle-mediated transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001165148.2 False 720 mRNA 0.43 3 16637490 16638951
TU1188546 True 3421 lncRNA 0.36 3 16634735 16638897

Neighbor

gene id symbol gene type direction distance location
LOC110537069 LOC106568328 coding downstream 7370 16616367 ~ 16630120 (-)
LOC110537062 csn4 coding downstream 60643 16569486 ~ 16576847 (-)
LOC110537061 LOC106568319 coding downstream 88417 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 coding downstream 309322 16324956 ~ 16328168 (-)
ppwd1 ppwd1 coding downstream 312728 16320428 ~ 16324762 (-)
LOC110537074 LOC106562412 coding upstream 301476 16940427 ~ 17041905 (-)
LOC110537073 LOC106568283 coding upstream 403420 17042371 ~ 17064591 (-)
LOC110537077 LOC106568284 coding upstream 426290 17065241 ~ 17068020 (-)
LOC110537076 LOC106568285 coding upstream 429230 17068181 ~ 17098190 (-)
LOC110537079 rilpl1 coding upstream 472812 17111763 ~ 17129179 (-)
G1043027 NA non-coding downstream 26349 16610103 ~ 16611141 (-)
G1043026 NA non-coding downstream 28645 16608512 ~ 16608845 (-)
G1043022 LOC100380853 non-coding downstream 33051 16604212 ~ 16604439 (-)
G1043017 NA non-coding downstream 38724 16598458 ~ 16598766 (-)
G1043015 NA non-coding downstream 39206 16597714 ~ 16598284 (-)
G1043030 NA non-coding upstream 1656 16640607 ~ 16640850 (-)
G1043055 NA non-coding upstream 68814 16707765 ~ 16764710 (-)
G1043066 NA non-coding upstream 79751 16718702 ~ 16720707 (-)
G1043065 NA non-coding upstream 81917 16720868 ~ 16724754 (-)
G1043068 NA non-coding upstream 86543 16725494 ~ 16725767 (-)
G1042500 NA other downstream 532607 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2326438 14307600 ~ 14311052 (-)
G1040300 NA other downstream 2457349 14178658 ~ 14180141 (-)
G1044482 NA other upstream 1057178 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 1379153 18018104 ~ 18018758 (-)
G1044671 NA other upstream 1417160 18056111 ~ 18058392 (-)
G1044692 NA other upstream 1458612 18097563 ~ 18099722 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G419350 NA non-coding CI01000304 null 2250825 ~ 2251046 (-)
tiger barb (Puntius tetrazona) si:ch73-234b20.5 si:ch73-234b20.5,LOC107702596,LOC107558257,LOC107653492,LOC107573851,LOC107732123,LOC108440734 misc NC_056708.1 CM032077.1 3596606 ~ 3604216 (+)