ddx55 (ddx55)


Basic Information

Item Value
gene id ddx55
gene name ddx55
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17269677 ~ 17275098 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622852.2
TTCCAGGCGGACGGTAAACATCGATGTACAGGAAGTCGGTACAGCGTGGATTGTGGCTGCATTTCCAACATGGACAACACAACTGAAGGAAAATGGGATAGTTTACCCGTTAAACTTAACGACGGTATTACGCAAACTCTCAATGAGCTTGGATTTACACATATGACACCAGTTCAGTCTGCCTGTATTCCACTGTTTATGCGAAATAAAGATGTGGCTGCCGAGGCTGTGACTGGCAGTGGAAAGACATTGGCCTTCGTGATTCCCATCATAGAGATACTTATAAAGCGAGAGGACAAATTGAAGAAAATGCAGGTTGGTGCTCTGATCGTCACGCCGACCAGAGAGCTGGCCCTGCAGATCAGTGAGGTGATGGGCCAGTTCCTCCAGAAGTTCCCTCAGTTCAGACAGATTCTGTTGATTGGAGGGAGCAACCCCATTGAGGATGTGGAGAAGTTTAAGGAACAGGGGGCCAACATATTGATTGCCACCCCGGGGCGTCTGGAGGACATGTTCAGAAGGAAGGCAGACGGTCTGGACCTGGCCTTGTCAGTCAAGTTTCTGGAGGTCCTGGTCCTGGATGAGGCTGACCGCCTTCTGGATATGGGCTTTGAGGCCAGtCTGAATGTTATCCTGGGGTACCTCCCTAAGCAGCGTCGTACAGGTCTGTTTTCAGCCACTCAGACTCAGGAGCTGGAAAAGCTGGTGAGAGCTGGTCTCAGGAACCCTGTACGAATCACAGTGAAGGAGAAGGGCGTGGCCGCCAGCTGCACCCAGAAAACACCTGCCAGGCTCTGCAActactacacaATCTGCAGAGCGGAGGACAAGTTTAACAGTCTGGTAGCGTTTCTTAGACAACACAAACATGAGAAACAGCTGGTGTTCTTCAGTACATGTGCGTGTGTGGAGTACTTTGGCCGAGCCTTGGAGGCCCTGATTAAGAGCGTCACCATCCACTGCATCCACGGCAAGATGAAACACAAACGCAACAAGATCTTCTCAGAGTTTAGGAGCCTAAAGAGTGGTATCCTGGTGTGTACTGACGTCATGGCCAGAGGCATTGATATCCCAGAAGTCCACTGGGTATTGCAGTACGACCCCCCTAGTTGTGCCAGTGCCTTTGTGCACCGGTGTGGACGGACTGCGCGCATTGGTAACAAAGGCAACGCCACAGTCTTCCTGCTCCCCATGGAGGAATCTTACGTTACCTTCCTGTCCATCAACCAGAAGTGTCCTCTGGAGCAGATGGCCCCAGTGAGTGACGTGGTGGATGTTCTGCCCAAGGTGAAGGCCCTGGCTCTGGCAGACCGGGCCATGTTCGACAGGGGCATGAGGGCATTCGTCTCCACCGTACAGGCCTACGCCAAACACGAGTGCAGCCTCATTTTCAGGGTCAAAGATCTGGACTTTGTTGCGCTGGCCCGTGGCTTCGCCCTCCTCCGCATGCCCAGGATGCCCGAGCTGAAAGGGAAGAACTTCCCTGACTTCATAGAAACGACCATAGACACAGACAATATCCGCTACAAGGACAAGCAGCGGGAGAAGCTGAGGCAGAAGCTGCTGATTGAGctaaaggagaagagggaggaaagggCCGCTGCCCCCAAGAGACACAACGATAAGAACAAAGCCTGGTCCAGACAGAAGAACAGGAAGGACCGCAGGAGGAAGACTGCTGCCAAGAGGAACCGGGATGAGGGCTCGGAAATGGACGATGAGGACATGAAGGAGCTGTTGAAGGACACTCGTCTCCTGAAGAGATTGAAGAAGGGACAGATCAGCGAGGAGGACTTTGAGAAACAGGTGACAGCAGGACCGAAGAGCCAGAGGAAGACAGCAGCAGGCCCCTCAGAGGACCCACCCAGCTCAGCGGGAGAGGAGGACGAATGAAACAACACACCTGTCAGTGTTTCCCCCCGATGTTCTAGCAGCAGGTCAGGCTGTCCCACCTGGCCCTGTTTACCATGGAAAAAAACAGAACATGTTATATTTTAGGGGGGCCTTTATGCCCCGCCTACAGAACAACCATAGGGGAAATACTGCCTGTTACAATAAGACGCAGGTCAGAACCACCCATTGAACTTTGAATACACTTTTAAAATAGAGCCAACTGTTTTACATCTATTATTCCGTTATGAACCAGAGAGATACATCACCTTTCAGGAATGTTATGTATACAGTGTAAAGTTATGCGTATCGCCATATTTTGTAATTAACAATCTATAAAAGATACAAACTGATCCCA

Function

symbol description
ddx55 Predicted to enable several functions, including ATP binding activity; RNA binding activity; and RNA helicase activity. Predicted to be active in nucleolus. Orthologous to human DDX55 (DEAD-box helicase 55).

NR:

description
ATP-dependent RNA helicase DDX55

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14809 DDX55, SPB4; ATP-dependent RNA helicase DDX55/SPB4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622852.2 True 2248 mRNA 0.51 13 17269677 17275098

Neighbor

gene id symbol gene type direction distance location
LOC110537086 LOC106568301 coding downstream 13403 17250072 ~ 17256274 (-)
LOC110537083 elovl2 coding downstream 89191 17179487 ~ 17180486 (-)
LOC118937877 NA coding downstream 131703 17135946 ~ 17137974 (-)
LOC110537079 rilpl1 coding downstream 140498 17111763 ~ 17129179 (-)
LOC110537076 LOC106568285 coding downstream 171487 17068181 ~ 17098190 (-)
LOC110537089 tmed2 coding upstream 148 17275246 ~ 17279138 (-)
LOC110537091 LOC106568276 coding upstream 227106 17502204 ~ 17524387 (-)
LOC110537096 LOC106562702 coding upstream 282037 17557135 ~ 17576537 (-)
LOC110537100 LOC106568268 coding upstream 406687 17681785 ~ 17710237 (-)
LOC110537102 LOC106568267 coding upstream 446079 17721177 ~ 17729244 (-)
G1043640 NA non-coding downstream 10789 17258568 ~ 17258888 (-)
G1043635 NA non-coding downstream 21385 17247521 ~ 17248292 (-)
G1043636 NA non-coding downstream 23510 17244807 ~ 17246167 (-)
G1043633 NA non-coding downstream 25917 17243497 ~ 17243760 (-)
G1043567 LOC106561138 non-coding downstream 29786 17236467 ~ 17239891 (-)
G1043654 NA non-coding upstream 8727 17283825 ~ 17284118 (-)
G1043643 LOC106562610 non-coding upstream 13487 17288585 ~ 17288920 (-)
G1043671 NA non-coding upstream 52865 17327963 ~ 17328188 (-)
G1043676 NA non-coding upstream 62788 17337886 ~ 17338096 (-)
G1043678 LOC100194703 non-coding upstream 63249 17338347 ~ 17338893 (-)
LOC110537077 LOC106568284 other downstream 201792 17065241 ~ 17068020 (-)
LOC110537061 LOC106568319 other downstream 724951 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 other downstream 941563 16324956 ~ 16328168 (-)
G1042500 NA other downstream 1164794 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2958625 14307600 ~ 14311052 (-)
G1044482 NA other upstream 421031 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 743006 18018104 ~ 18018758 (-)
G1044671 NA other upstream 781013 18056111 ~ 18058392 (-)
G1044692 NA other upstream 822465 18097563 ~ 18099722 (-)
G1044761 NA other upstream 917136 18192234 ~ 18193223 (-)

Expression


Co-expression Network