LOC110537089 (tmed2)


Basic Information

Item Value
gene id LOC110537089
gene name tmed2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17275246 ~ 17279138 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622855.1
GTTTGACCCTCGCTTTTTCCCGTTTAAATCCTTACGTGGCAATCTCGCCGAAGCTAGCTAGGAAGTTTACAAAATATCCTCTAATTTGTGCTTGTTCTGAGCCTCCTGCTGCGATACATGTGCAATTTTAGGGGATATTTGAAATCGCTGGTACACAGAGAATCTACAATTGTCACGTAACGCTAGCTAAAATCTAAGCATGTTCACTGCTTCAGAGATCGTTGTTCTTCTTGTGTTCATGTCTGCCACAGCGTCCGGCTACTTCGTTAGTATAGACGCCCATGCAGATGAGTGCTTCCATGAGCGGGTTAACTCGGGAACCAAGATGGGCCTAATGTTTGAAGTTGCTGAGGGGGGCTTTTTGGACATTGACGTTGAGATAACAGGACCTGATGGCAAGCAGATCTACAAAGGAGATCGAGAGTCCAGTGGAAAGTATTCCGTGGCAGCTCATATGGACGGGACCTACAAGTTCTGCTTCAGCAACAAGATGTCCACCATGACACCCAAGATCGTCATGTTCACCATCGACATCGGAGAGGCACCAAAGGGACAGGACATGGAGACGGAAGGTGGAGAGAGTTGGGATGCTCACCAGAACAAGCTGGAGGAGATGATCAACGAGCTGGCGGTTGCCATGACGGCCGTCAAGCATGAACAGGAGTACATGGAGGTCCGGGAGAGGATACACAGAGCCATCAATGACAACACAAACAGCAGGGTGGTTCTCTGGTCGTTCTTCGAAGCCCTGGTTCTGGTGGCAATGACTCTGGGACAGATCTACTACCTGAAGAGGTTCTTCGAAGTGCGCCGAGTTGTGTAACACCTCAAACCTTCCCCCTGTGACTTCCTGTTGCACTGTTATTTCAGCACAGAGACAGCAAAACAGTCACTCCTTGGAAATGAGACTCTTGGTAGATTTCATTAAAAGTCTGAGTACAAATTGGATCCCTATTatttaaaaataatgttttacCCTGTTACCCCATCTGTTATTTCCATCTTTATGTGCTTCTTACTGTTGTATCTGTTTTGGACTCTAGACCTTTCAAAGATCATAGGGTTGATGATGTCAAGTTTGATTTATTTTCTAATCACTGCGTAAGCAAATAATTTGTTATGGATTACTCCACCCAGCTTGGTCAACAGCAACTACTAGCCATGCACTAGCcagagaggtctgtctgtctctagtcaGTGGATGGGATGTATAAAGTAACAAAACTGGGACCGGCATTTGAGAGATGCAGACTGGTGTTTATGCAACAGTATGTCCCTTATTTGACCCATTTTTTTGACACCTTTGCAATTGATATGACCAactagttaatatacagtatgcATAAGCTCAAGGTGAGACACTTGGGGCTTGTTCAGGAGAGTGAAATATCCCAGAATGTTCATGTAGAAATGTATTGTGCAGAAGCGACATTATTTTCTGTTATGTAGAATAAAGAGTTGTGTTGACTCTATGGATCATATTTCTATCTGCAACCTTCTGAACATAGCATCCTGCTAAATATCCCTGAATATCTGAAGGTGTTGTATTGTCTGGGAAGCAGATGTTTTTGCTCTTGTTGCTTTTGAGTCAAAGATCCATGACATTGATCTTTGGCAGTGCAGGGAAAACCTGTATACTCCCATTTTACCACAGATGGGTTATAGTAGGTCAGTGTTTACTCAAACCTGGCCATGGGGATCCACTGGGCGTGCAGGGTTTAGTCTAGCTCATCACTCACACCTGTTGCAACTAATCAATTATTAATTTAACCCTGGATTAGATGATTCAGgtgtgttagagctgggctggCACAAAGCCCCGGACCCCTGTATTTGCCTAGAATCAGGAAGGAAGAACACTGTAATAGATTATATTGGATGTGGGCAGGGGGCTGAAACTATATTATGATTGTCAAGGTGAGGTAGTTgcttcaacattttgttgtgggGACTGGTTGTTATTTGGGGTGGGGAAGGTTGGGGGCTCTACTTTGTGGCAATAAGCTGTTTTTTTTCCTTCTGCAGCATATTCAGTGTGGTGCAACATTCAGAACATTGGTATGTCGATGTATAAGAATGGACATGACTAGAGGATTAATTGTAGGCCTATTCTGTCTATAATCTATTTGAAACATAAATGTTGTGTCTTACTGAATATGCCATAGTTTTGTACTTTACATGTTCTGATAAGCTCAGCTATAACTGTCACGTGAGACTGGAGTGACGACAGGAGAAATTAGGTCAAGTCACTCCTGAACGTCATCAATGAAGTTCTGCAGCATTTTAAAGAAATATGCTTGTCTGTGGATCCAGTTttaataaaacaaatacaatatTCTTTAAAAA
>XM_021622856.1
GTTTGACCCTCGCTTTTTCCCGTTTAAATCCTTACGTGGCAATCTCGCCGAAGCTAGCTAGGAAGTTTACAAAATATCCTCTAATTTGTGCTTGTTCTGAGCCTCCTGCTGCGATACATGTGCAATTTTAGGGGATATTTGAAATCGCTGGTACACAGAGAATCTACAATTGTCACGTAACGCTAGCTAAAATCTAAGCATGTTCACTGCTTCAGAGATCGTTGTTCTTCTTGTGTTCATGTCTGCCACAGCGTCCGGCTACTTCGTTAGTATAGACGCCCATGCAGATGAGTGCTTCCATGAGCGGGTTAACTCGGGAACCAAGATGGGCCTAATGTTTGAAGTTGCTGAGGGGGGCTTTTTGGACATTGACGTTGAGATAACAGGACCTGATGGCAAGCAGATCTACAAAGGAGATCGAGAGTCCAGTGGAAAGTATTCCGTGGCAGCTCATATGGACGGGACCTACAAGTTCTGCTTCAGCAACAAGATGTCCACCATGACACCCAAGATCGTCATGTTCACCATCGACATCGGAGAGGCACCAAAGGGACAGGACATGGAGACGGAAGCTCACCAGAACAAGCTGGAGGAGATGATCAACGAGCTGGCGGTTGCCATGACGGCCGTCAAGCATGAACAGGAGTACATGGAGGTCCGGGAGAGGATACACAGAGCCATCAATGACAACACAAACAGCAGGGTGGTTCTCTGGTCGTTCTTCGAAGCCCTGGTTCTGGTGGCAATGACTCTGGGACAGATCTACTACCTGAAGAGGTTCTTCGAAGTGCGCCGAGTTGTGTAACACCTCAAACCTTCCCCCTGTGACTTCCTGTTGCACTGTTATTTCAGCACAGAGACAGCAAAACAGTCACTCCTTGGAAATGAGACTCTTGGTAGATTTCATTAAAAGTCTGAGTACAAATTGGATCCCTATTatttaaaaataatgttttacCCTGTTACCCCATCTGTTATTTCCATCTTTATGTGCTTCTTACTGTTGTATCTGTTTTGGACTCTAGACCTTTCAAAGATCATAGGGTTGATGATGTCAAGTTTGATTTATTTTCTAATCACTGCGTAAGCAAATAATTTGTTATGGATTACTCCACCCAGCTTGGTCAACAGCAACTACTAGCCATGCACTAGCcagagaggtctgtctgtctctagtcaGTGGATGGGATGTATAAAGTAACAAAACTGGGACCGGCATTTGAGAGATGCAGACTGGTGTTTATGCAACAGTATGTCCCTTATTTGACCCATTTTTTTGACACCTTTGCAATTGATATGACCAactagttaatatacagtatgcATAAGCTCAAGGTGAGACACTTGGGGCTTGTTCAGGAGAGTGAAATATCCCAGAATGTTCATGTAGAAATGTATTGTGCAGAAGCGACATTATTTTCTGTTATGTAGAATAAAGAGTTGTGTTGACTCTATGGATCATATTTCTATCTGCAACCTTCTGAACATAGCATCCTGCTAAATATCCCTGAATATCTGAAGGTGTTGTATTGTCTGGGAAGCAGATGTTTTTGCTCTTGTTGCTTTTGAGTCAAAGATCCATGACATTGATCTTTGGCAGTGCAGGGAAAACCTGTATACTCCCATTTTACCACAGATGGGTTATAGTAGGTCAGTGTTTACTCAAACCTGGCCATGGGGATCCACTGGGCGTGCAGGGTTTAGTCTAGCTCATCACTCACACCTGTTGCAACTAATCAATTATTAATTTAACCCTGGATTAGATGATTCAGgtgtgttagagctgggctggCACAAAGCCCCGGACCCCTGTATTTGCCTAGAATCAGGAAGGAAGAACACTGTAATAGATTATATTGGATGTGGGCAGGGGGCTGAAACTATATTATGATTGTCAAGGTGAGGTAGTTgcttcaacattttgttgtgggGACTGGTTGTTATTTGGGGTGGGGAAGGTTGGGGGCTCTACTTTGTGGCAATAAGCTGTTTTTTTTCCTTCTGCAGCATATTCAGTGTGGTGCAACATTCAGAACATTGGTATGTCGATGTATAAGAATGGACATGACTAGAGGATTAATTGTAGGCCTATTCTGTCTATAATCTATTTGAAACATAAATGTTGTGTCTTACTGAATATGCCATAGTTTTGTACTTTACATGTTCTGATAAGCTCAGCTATAACTGTCACGTGAGACTGGAGTGACGACAGGAGAAATTAGGTCAAGTCACTCCTGAACGTCATCAATGAAGTTCTGCAGCATTTTAAAGAAATATGCTTGTCTGTGGATCCAGTTttaataaaacaaatacaatatTCTTTAAAAA

Function

symbol description
tmed2 Predicted to be involved in Golgi organization; endoplasmic reticulum to Golgi vesicle-mediated transport; and intracellular protein transport. Predicted to act upstream of or within protein transport. Predicted to be located in endoplasmic reticulum membrane and endoplasmic reticulum-Golgi intermediate compartment membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including COPII-coated ER to Golgi transport vesicle; Golgi apparatus; and endoplasmic reticulum-Golgi intermediate compartment. Orthologous to human TMED2 (transmembrane p24 trafficking protein 2).

NR:

description
transmembrane emp24 domain-containing protein 2-like isoform X2

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0006810 transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K20347 TMED2, EMP24; p24 family protein beta-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622855.1 False 2346 mRNA 0.43 5 17275246 17279138
XM_021622856.1 True 2328 mRNA 0.43 4 17275246 17279138

Neighbor

gene id symbol gene type direction distance location
ddx55 ddx55 coding downstream 148 17269677 ~ 17275098 (-)
LOC110537086 LOC106568301 coding downstream 18972 17250072 ~ 17256274 (-)
LOC110537083 elovl2 coding downstream 94760 17179487 ~ 17180486 (-)
LOC118937877 NA coding downstream 137272 17135946 ~ 17137974 (-)
LOC110537079 rilpl1 coding downstream 146067 17111763 ~ 17129179 (-)
LOC110537091 LOC106568276 coding upstream 223066 17502204 ~ 17524387 (-)
LOC110537096 LOC106562702 coding upstream 277997 17557135 ~ 17576537 (-)
LOC110537100 LOC106568268 coding upstream 402647 17681785 ~ 17710237 (-)
LOC110537102 LOC106568267 coding upstream 442039 17721177 ~ 17729244 (-)
LOC110536806 LOC106568132 coding upstream 474825 17753963 ~ 17808512 (-)
G1043640 NA non-coding downstream 16358 17258568 ~ 17258888 (-)
G1043635 NA non-coding downstream 26954 17247521 ~ 17248292 (-)
G1043636 NA non-coding downstream 29079 17244807 ~ 17246167 (-)
G1043633 NA non-coding downstream 31486 17243497 ~ 17243760 (-)
G1043567 LOC106561138 non-coding downstream 35355 17236467 ~ 17239891 (-)
G1043654 NA non-coding upstream 4687 17283825 ~ 17284118 (-)
G1043643 LOC106562610 non-coding upstream 9447 17288585 ~ 17288920 (-)
G1043671 NA non-coding upstream 48825 17327963 ~ 17328188 (-)
G1043676 NA non-coding upstream 58748 17337886 ~ 17338096 (-)
G1043678 LOC100194703 non-coding upstream 59209 17338347 ~ 17338893 (-)
LOC110537077 LOC106568284 other downstream 207361 17065241 ~ 17068020 (-)
LOC110537061 LOC106568319 other downstream 730520 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 other downstream 947132 16324956 ~ 16328168 (-)
G1042500 NA other downstream 1170363 16104163 ~ 16104883 (-)
G1040432 LOC106568413 other downstream 2964194 14307600 ~ 14311052 (-)
G1044482 NA other upstream 416991 17696129 ~ 17697105 (-)
G1044649 LOC106568140 other upstream 738966 18018104 ~ 18018758 (-)
G1044671 NA other upstream 776973 18056111 ~ 18058392 (-)
G1044692 NA other upstream 818425 18097563 ~ 18099722 (-)
G1044761 NA other upstream 913096 18192234 ~ 18193223 (-)

Expression


Co-expression Network