Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110537090 |
| gene name | LOC106568279 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048576.1 |
| NCBI id | CM023230.2 |
| chromosome length | 102853256 |
| location | 17359403 ~ 17467846 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| tetratricopeptide repeat protein 28-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036937076.1 | False | 9360 | mRNA | 0.56 | 38 | 17359403 | 17467846 |
| XM_036937077.1 | False | 9357 | mRNA | 0.56 | 38 | 17359403 | 17467846 |
| XM_036937078.1 | False | 9357 | mRNA | 0.56 | 38 | 17359403 | 17467846 |
| XM_036937079.1 | False | 9336 | mRNA | 0.56 | 37 | 17359403 | 17467846 |
| XM_036937080.1 | True | 9262 | mRNA | 0.55 | 38 | 17405739 | 17467846 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| pla2g3 | LOC106568300 | coding | upstream | 267 | 17353351 ~ 17359136 (+) |
| LOC110536803 | NA | coding | upstream | 15966 | 17325584 ~ 17343437 (+) |
| ptpn11a | LOC106568295 | coding | upstream | 66263 | 17279208 ~ 17293140 (+) |
| LOC110537088 | LOC106568294 | coding | upstream | 89734 | 17263321 ~ 17269669 (+) |
| clip1b | LOC106568293 | coding | upstream | 122436 | 17168354 ~ 17236967 (+) |
| LOC110537092 | LOC106568278 | coding | downstream | 465 | 17468311 ~ 17502099 (+) |
| LOC110536805 | brap | coding | downstream | 61865 | 17529711 ~ 17538777 (+) |
| LOC110537094 | ci167 | coding | downstream | 75524 | 17543370 ~ 17594573 (+) |
| LOC110537097 | LOC106568272 | coding | downstream | 111379 | 17579225 ~ 17597135 (+) |
| LOC110537098 | pi4ka | coding | downstream | 150404 | 17618250 ~ 17663678 (+) |
| G1043679 | NA | non-coding | upstream | 20041 | 17339135 ~ 17339362 (+) |
| G1043677 | NA | non-coding | upstream | 20273 | 17338732 ~ 17339130 (+) |
| G1043674 | NA | non-coding | upstream | 29477 | 17329676 ~ 17329926 (+) |
| G1043458 | NA | non-coding | upstream | 50079 | 17309033 ~ 17309324 (+) |
| G1043456 | NA | non-coding | upstream | 53440 | 17305388 ~ 17305963 (+) |
| G1043824 | NA | non-coding | downstream | 172457 | 17640303 ~ 17641081 (+) |
| G1043827 | NA | non-coding | downstream | 199434 | 17667280 ~ 17667557 (+) |
| G1043997 | LOC106568268 | non-coding | downstream | 213994 | 17681840 ~ 17689055 (+) |
| G1043999 | NA | non-coding | downstream | 224173 | 17692019 ~ 17692284 (+) |
| G1043449 | tmed2 | other | upstream | 80285 | 17275268 ~ 17279118 (+) |
| G1043245 | NA | other | upstream | 368058 | 16909786 ~ 16991345 (+) |
| G1041576 | yo84 | other | upstream | 1750951 | 15604625 ~ 15608452 (+) |
| G1041494 | LOC106568352 | other | upstream | 1841641 | 15464803 ~ 15564470 (+) |
| G1041432 | NA | other | upstream | 1996661 | 15344919 ~ 15362742 (+) |
| G1044002 | NA | other | downstream | 253247 | 17721093 ~ 17729254 (+) |
| G1044056 | NA | other | downstream | 418807 | 17886653 ~ 17887917 (+) |
| G1044201 | NA | other | downstream | 607956 | 18075802 ~ 18077300 (+) |
| G1044265 | NA | other | downstream | 828084 | 18295930 ~ 18296402 (+) |
| G1044317 | NA | other | downstream | 924800 | 18392646 ~ 18393341 (+) |
