LOC110537097 (LOC106568272)


Basic Information

Item Value
gene id LOC110537097
gene name LOC106568272
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17579225 ~ 17597135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622867.2
CCTAAAAACACTGACCACGATGGGCCGATACACTAGCCTACTGGCAATGGAGGAGTGAGGAAACTTCGCCTGTCAAAAGTGCAGATTCAACATTATCTTTTGTACCGTGCCAAGTCCAATGATCAACACCGCCTTTGTAAATGATCGCACAGCAATTCgtgcacagagcagtagagtgcACGGAGGCTGACGATCGGGAGAGAGAACGAGTGTCGTCGTAGAATAGAACAAGTTCTAGCTTGTTTTTTGGGGCGCGATTGTTGCCAATATGTCCGGGAATCCCACATTTGTGAGTCCCTTCCACAGACCCCGCTGTTTGGCCGCAGCCGCGCCAGCAGGGAAAGCCAAACTCACCCACCCGGGCAAAGCCATTCTAGCAGgtGGTATTGCTGGAGGAATAGAGATCTGTATTACATTCCCTACAGAGTATGTGAAGACTCAGCTGCAGCTGGATGAGAAGGCCAACCCTCCCAGATATAAAGGCATTGTTGACTGTGTGAAGCAGACGGTAGATGGTCATGGGGTGAGGGGTCTGTACAGAGGGCTCAGCTCACTGCTCTATGGCTCCATACCCAAAGCAGCTGTCAGGTTTGGTATGTTTGAGTTCCTCAGTAATAAGATGCGTGATGAGAATGGGAAGCTGGACAGTACCCGGGGTCTTTTCTGTGGTCTGGGGGCAGGAATGGCTGAGGCTGTGGTGGTGGTCTGCCCCATGGAGACGGTCAAGGTAAAGTTCATCCATGACCAGTCATCAGCCAACCCAAAGTACCGGGGATTTTTCCATGGAGTCGGGGAGATCATCAGAACCGAAGGCCTGAGGGGGACGTACCAGGGTCTGACAGCTACGGTACTGAAACAGGGATCCAACCAGGCCATCCGCTTCTACGTTATGACCTCTCTAAGGAACTGgtacaaagGTGATGACCCTAACAAGGCCATTAACCCTCTGGTCACGGGAGCATTCGGGGCCTTCGCTGGAGCTGTCAGTGTGTTTGGAAACACTCCTCTTGATGTCATCAAAACCAGGATGCAGGGTCTGGAGGCTCACAAGTACAAAAGTACCCTGGACTGTGCCGTCAAGATCATGAAGCATGAGGGACCTAAAGCGTTCTATAAGGGTACAGTCCCCAGGCTGGGTAGGGTGTGTATGGACGTAGCTATCGTCTTCATCATCTATGAGGAGGTGGTGAAAGTCCTCAACAAAGTCTGGAAGACGGACTAAGACCACATTTCTGTGACGACCAGCGGAGCAGGGAACGGCCGGGAAGGCCTGTTGACATCATAACTATGGCCTGATTCCAAACCCAATCCCTTTGCCCTTTCCTTAGGTTTACCATGTCTAGCAACCTCCTCACAGATCTGACACGACTCTGTATTTCATTCCAGAAAGTTGTTCTCTGTCCCCTACCCTTGTTTACTTTGATGGTTGAGTGCACTTCACCTAGGGTGCTATAGGATCCTATCAGGGACACTACTATCATATTGGTTATACCTACTGTAGGGGGATTTAGGGGGGGATTTAGCAAGGGCACAGGGGGTAGGGTGAGGAATTGGGCCTATGTGACTGAAATATGGGAACACGGTGTGTCATTCCAGAGAAGTGTAGTAGACGGACAGTGCTTCAGTTCACTAATGGCTATTGTTATCATCTTATGTTATACGTTAACATACTTGACTTAATCAAAAATGAAATGATACTTATAAAACCCCAAATAATGTGATGTAGATCAACAGAAAACACTTGAAATGACAGAGGAGGATCTCAGAGGCTTTTAACTCCAAGGGCATTTAACATTTAACAGGAAATGGTATTACCCGGTGAAATGGGTCTGGTAGAGACCATCGTTTTTCCCTAATAGCAGTATAACAGACATGTCTGTTTGTTCACGGGTCATATGAGTCTTATTGTCCAGGTCTGAATGCAATGCAGGTCTGAAATGTTTTAGCTGCTTTACATACCTGAGTGCTATTACATCACAATGCCTTATAGATTGTTATATTCAGAGATATCTTTATGGTAGAATGCTATcatgggtgcgttcgtaaatgtGTCAGTTATTCTGTTCTGTGGCACATTCAGaccagagtgctctgaaatcggagtagacagagtgaatttacaaacgcacccTATATGTAGTAACCATAATTGTTGTGACCATAGAATTAGAACTCTGTGTTTAATTGCTATTCATTCTACTAATTCTGTAGTGGTGAATAGCCTGTTTTTGGTGTCAGTCAAATACAGAGATGTACATGTCATACAGTATACTCAGACATTCTGCAGAATGCACCAACACTTTTTTAAGTTAATTCCATAAAAACAATGACCAAGATTGAGATGATGCTGGTGAGGGTGATGAACTTTGCAATTGCAAATGTGAAACATCagaaatatatttacataatgattgtttattggggggggggttgattgttgtatgaAAGTGCCTGCAAGTGTATCTCATGATTGTTTTAGAAATCTGGTATAAGATGTCTAGTGTTACTAATGTCTATAGTTGAATGTCTTATCTGGGTCAGTTCTTCATTACTGTCATATGATACAATAactgaattgtttttatttaatataGACAGTAACACAGTGCAATGAGGCCTTGCTGAGATGTTTTTATTGGCAAATATGATTAGATGTACTGGTTGACAGTATTGCTCACCAGACACTATCATAATGCAGCCTTGAGTAATTCAATGTGATGAGATATTGTCTCGTAATGTTCCCTGTCAGTTATAGAGTATGTATAAATGTCTTTGATTTACAATTTATGATTACAAATTTCCTTGGTAGTGTTGAGGGGTGGGGACACTGAtttttatttaaaatgactaGATTTATCTTCAGGGCGGCTCCAGGCACAAGCAGCATAAACTCAGTCCAGCTGTCAATTTGCAAGTTccaaatttggttgtgcatcaacaATTTTTCTATTATGTCAGTCACTAGCtatgtttccatccaattggcgacagattttcatgtgaatattctagaaTCTGCAGAAATAAAATATGGTCATTTTGGACGGGAAAAAAATCagtgtgatgacatagtgcacacaatGTACCTTTTCACTTAAGTTTTCGTGTACCGAATAAAACGTTTTGTTTCCAtagca
>XM_036937087.1
CTGAATCCATGAACCATGATGACACAGCATAAATCCACACACTTCTGCAGTtcagagagcacacacacacacacatgcacacgtgcAGCTGGATTACAACATCCTTTCACCCGACCAGCTCAGACCAGGGCCAGGGACGCATGCAGAAGAAGCCGCAGCATTGGGTTGCAGTTGAGGTTCAACCAGGACGtttcccaaacacacacaggttTAGGGTCAGCTTTCCCAACTCCAAATCTAACAGTTTTTTTCCATGgtGGTATTGCTGGAGGAATAGAGATCTGTATTACATTCCCTACAGAGTATGTGAAGACTCAGCTGCAGCTGGATGAGAAGGCCAACCCTCCCAGATATAAAGGCATTGTTGACTGTGTGAAGCAGACGGTAGATGGTCATGGGGTGAGGGGTCTGTACAGAGGGCTCAGCTCACTGCTCTATGGCTCCATACCCAAAGCAGCTGTCAGGTTTGGTATGTTTGAGTTCCTCAGTAATAAGATGCGTGATGAGAATGGGAAGCTGGACAGTACCCGGGGTCTTTTCTGTGGTCTGGGGGCAGGAATGGCTGAGGCTGTGGTGGTGGTCTGCCCCATGGAGACGGTCAAGGTAAAGTTCATCCATGACCAGTCATCAGCCAACCCAAAGTACCGGGGATTTTTCCATGGAGTCGGGGAGATCATCAGAACCGAAGGCCTGAGGGGGACGTACCAGGGTCTGACAGCTACGGTACTGAAACAGGGATCCAACCAGGCCATCCGCTTCTACGTTATGACCTCTCTAAGGAACTGgtacaaagGTGATGACCCTAACAAGGCCATTAACCCTCTGGTCACGGGAGCATTCGGGGCCTTCGCTGGAGCTGTCAGTGTGTTTGGAAACACTCCTCTTGATGTCATCAAAACCAGGATGCAGGGTCTGGAGGCTCACAAGTACAAAAGTACCCTGGACTGTGCCGTCAAGATCATGAAGCATGAGGGACCTAAAGCGTTCTATAAGGGTACAGTCCCCAGGCTGGGTAGGGTGTGTATGGACGTAGCTATCGTCTTCATCATCTATGAGGAGGTGGTGAAAGTCCTCAACAAAGTCTGGAAGACGGACTAAGACCACATTTCTGTGACGACCAGCGGAGCAGGGAACGGCCGGGAAGGCCTGTTGACATCATAACTATGGCCTGATTCCAAACCCAATCCCTTTGCCCTTTCCTTAGGTTTACCATGTCTAGCAACCTCCTCACAGATCTGACACGACTCTGTATTTCATTCCAGAAAGTTGTTCTCTGTCCCCTACCCTTGTTTACTTTGATGGTTGAGTGCACTTCACCTAGGGTGCTATAGGATCCTATCAGGGACACTACTATCATATTGGTTATACCTACTGTAGGGGGATTTAGGGGGGGATTTAGCAAGGGCACAGGGGGTAGGGTGAGGAATTGGGCCTATGTGACTGAAATATGGGAACACGGTGTGTCATTCCAGAGAAGTGTAGTAGACGGACAGTGCTTCAGTTCACTAATGGCTATTGTTATCATCTTATGTTATACGTTAACATACTTGACTTAATCAAAAATGAAATGATACTTATAAAACCCCAAATAATGTGATGTAGATCAACAGAAAACACTTGAAATGACAGAGGAGGATCTCAGAGGCTTTTAACTCCAAGGGCATTTAACATTTAACAGGAAATGGTATTACCCGGTGAAATGGGTCTGGTAGAGACCATCGTTTTTCCCTAATAGCAGTATAACAGACATGTCTGTTTGTTCACGGGTCATATGAGTCTTATTGTCCAGGTCTGAATGCAATGCAGGTCTGAAATGTTTTAGCTGCTTTACATACCTGAGTGCTATTACATCACAATGCCTTATAGATTGTTATATTCAGAGATATCTTTATGGTAGAATGCTATcatgggtgcgttcgtaaatgtGTCAGTTATTCTGTTCTGTGGCACATTCAGaccagagtgctctgaaatcggagtagacagagtgaatttacaaacgcacccTATATGTAGTAACCATAATTGTTGTGACCATAGAATTAGAACTCTGTGTTTAATTGCTATTCATTCTACTAATTCTGTAGTGGTGAATAGCCTGTTTTTGGTGTCAGTCAAATACAGAGATGTACATGTCATACAGTATACTCAGACATTCTGCAGAATGCACCAACACTTTTTTAAGTTAATTCCATAAAAACAATGACCAAGATTGAGATGATGCTGGTGAGGGTGATGAACTTTGCAATTGCAAATGTGAAACATCagaaatatatttacataatgattgtttattggggggggggttgattgttgtatgaAAGTGCCTGCAAGTGTATCTCATGATTGTTTTAGAAATCTGGTATAAGATGTCTAGTGTTACTAATGTCTATAGTTGAATGTCTTATCTGGGTCAGTTCTTCATTACTGTCATATGATACAATAactgaattgtttttatttaatataGACAGTAACACAGTGCAATGAGGCCTTGCTGAGATGTTTTTATTGGCAAATATGATTAGATGTACTGGTTGACAGTATTGCTCACCAGACACTATCATAATGCAGCCTTGAGTAATTCAATGTGATGAGATATTGTCTCGTAATGTTCCCTGTCAGTTATAGAGTATGTATAAATGTCTTTGATTTACAATTTATGATTACAAATTTCCTTGGTAGTGTTGAGGGGTGGGGACACTGAtttttatttaaaatgactaGATTTATCTTCAGGGCGGCTCCAGGCACAAGCAGCATAAACTCAGTCCAGCTGTCAATTTGCAAGTTccaaatttggttgtgcatcaacaATTTTTCTATTATGTCAGTCACTAGCtatgtttccatccaattggcgacagattttcatgtgaatattctagaaTCTGCAGAAATAAAATATGGTCATTTTGGACGGGAAAAAAATCagtgtgatgacatagtgcacacaatGTACCTTTTCACTTAAGTTTTCGTGTACCGAATAAAACGTTTTGTTTCCAtagca

Function

NR:

description
tricarboxylate transport protein, mitochondrial

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15100 SLC25A1, CTP; solute carrier family 25 (mitochondrial citrate transporter), member 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622867.2 False 3137 mRNA 0.44 9 17579225 17597135
XM_036937087.1 True 3013 mRNA 0.43 10 17585842 17597135
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110537094 ci167 coding upstream 20181 17543370 ~ 17594573 (+)
LOC110536805 brap coding upstream 40448 17529711 ~ 17538777 (+)
LOC110537092 LOC106568278 coding upstream 77126 17468311 ~ 17502099 (+)
LOC110537090 LOC106568279 coding upstream 111379 17359403 ~ 17467846 (+)
pla2g3 LOC106568300 coding upstream 220089 17353351 ~ 17359136 (+)
LOC110537098 pi4ka coding downstream 21115 17618250 ~ 17663678 (+)
LOC110537101 LOC106562742 coding downstream 117025 17714160 ~ 17717729 (+)
LOC110537103 xpo7 coding downstream 234087 17831222 ~ 17858119 (+)
LOC110537106 LOC106568134 coding downstream 266382 17863517 ~ 17886525 (+)
LOC118937634 NA coding downstream 292239 17888059 ~ 17891148 (+)
G1043752 NA non-coding upstream 168556 17410378 ~ 17410669 (+)
G1043679 NA non-coding upstream 239863 17339135 ~ 17339362 (+)
G1043677 NA non-coding upstream 240095 17338732 ~ 17339130 (+)
G1043674 NA non-coding upstream 249299 17329676 ~ 17329926 (+)
G1043458 NA non-coding upstream 269901 17309033 ~ 17309324 (+)
G1043824 NA non-coding downstream 43168 17640303 ~ 17641081 (+)
G1043827 NA non-coding downstream 70145 17667280 ~ 17667557 (+)
G1043997 LOC106568268 non-coding downstream 84705 17681840 ~ 17689055 (+)
G1043999 NA non-coding downstream 94884 17692019 ~ 17692284 (+)
G1044013 NA non-coding downstream 109087 17706222 ~ 17706624 (+)
G1043449 tmed2 other upstream 300107 17275268 ~ 17279118 (+)
G1043245 NA other upstream 587880 16909786 ~ 16991345 (+)
G1041576 yo84 other upstream 1970773 15604625 ~ 15608452 (+)
G1041494 LOC106568352 other upstream 2061463 15464803 ~ 15564470 (+)
G1041432 NA other upstream 2216483 15344919 ~ 15362742 (+)
G1044002 NA other downstream 123958 17721093 ~ 17729254 (+)
G1044056 NA other downstream 289518 17886653 ~ 17887917 (+)
G1044201 NA other downstream 478667 18075802 ~ 18077300 (+)
G1044265 NA other downstream 698795 18295930 ~ 18296402 (+)
G1044317 NA other downstream 795511 18392646 ~ 18393341 (+)

Expression

LOC110537097(LOC106568272) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 100.
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LOC110537097(LOC106568272) Expression in each Bioproject

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LOC110537097(LOC106568272) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 4000.
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Co-expression Network