LOC110537108 (LOC106563398)


Basic Information

Item Value
gene id LOC110537108
gene name LOC106563398
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17860100 ~ 17863387 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622888.2
ATTTAGCTTTAACCAGTCCCAGATGTCACAGCAGATGTAGGAAAGGAGACAAGGCGTGGGCCCTTTAAGCAGAACGATATGACGTAATCGGGTCAGGGGTTTACAGCTATGGCGTCGGGAAATGGACTTGCTTCTCTGGGTGTCGAGGGAGCTACAGCAGCCGCACAGGCTCTGTCTCTACCAGCTGAGGCGTATGGGAACGATCCTCAACTGGAAGTGATGTGGGCGATGAAGGCTTACAATCACGCAGAAATCTACTTCAATctgCTCTCGTCGGTAGACCCCAGTAATCTGAAGTTGACCACGGTGGATGACCGGATCTATACATCCTTCAAAGAATCTTTCTCAGACCTCAACATTAAGAACTTGGACCCAGACATGCTCAAAACGGCAGAGGCCAAAGAGAAGTGGCGTCCATTCTGTAACCAGTTTGACGGAGTGGTGGAGGACTTTAACTACGGGACTCTGCTACGACTTGACTGTGTGAAGGACTACACAGAGGAAAACACCATATTTGCCACCAGGATCCAGTTCTTTGCCATAGAGATCGCTAGGAACAGAGAAGGATTCAACACCCCTGTTTTCCAGGCTAAAAAGCAGCCTTCGTAAACCCATACCCTAAAACCCAACCTACTATAACCTCTAACCCAGTAACAGAGAAAGTTGTCAGCTGTACCAGGTAAACACCCTTTATaaaccctaccaccaccaccacctctaacaCAGAGAAGGTTTTAACAGCTCTGGTTACTAGTGTAACTAGTAACTAGTGTAACACCACCATCTCCTTACAAACTTTTCCTCTGGTCACCCACCTTGTTGACAAAATAGGTGGTCTACTGGAAACTAGACCATGGGCATGTTCAGCAGGGGTATATTCTTTACATCTTGCAACAGAAAACATTTAAGAACCAAATCTAAACatggagggacctacctgaatttttACAATAGAAACCCGTTTTCCATTTGGAATAAATGgtttgttgcaaaacgttttgcaacaatcTGTGTAATACACCCCAGGGCACGTTAAGATAAATATGTACAACAAACAATTCACagtatttctatctgcaacatttgCTTACTGAACATGGCCCAGAagtccacccctcctccctccacacacacacatcccataagtgtgtgtatgtgtgtgtgtgtactgatgtCTAAACTGAGCATCGTAGCTATATGTAATTAGCTTTCCTCTTATTTGTGCCAAGCACTTCTGGGATTGCATATGTCCTTGTACAAAGTTGTAAACGTCTTTCAAATggcatacatatatatatatatatatat

Function

NR:

description
protein PBDC1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622888.2 True 1308 mRNA 0.44 6 17860100 17863387

Neighbor

gene id symbol gene type direction distance location
LOC110536806 LOC106568132 coding downstream 51588 17753963 ~ 17808512 (-)
LOC110537102 LOC106568267 coding downstream 130856 17721177 ~ 17729244 (-)
LOC110537100 LOC106568268 coding downstream 149863 17681785 ~ 17710237 (-)
LOC110537096 LOC106562702 coding downstream 283563 17557135 ~ 17576537 (-)
LOC110537091 LOC106568276 coding downstream 335713 17502204 ~ 17524387 (-)
LOC110537109 pp2bc coding upstream 28507 17891894 ~ 17912969 (-)
LOC100135895 LOC100135895 coding upstream 72341 17935728 ~ 17940707 (-)
LOC118937764 NA coding upstream 98589 17961976 ~ 17964065 (-)
LOC110537114 NA coding upstream 206263 18069650 ~ 18079512 (-)
LOC110537117 LOC106568145 coding upstream 236646 18100033 ~ 18100881 (-)
G1044559 NA non-coding downstream 30780 17828858 ~ 17829320 (-)
G1044558 NA non-coding downstream 31355 17828467 ~ 17828745 (-)
G1044555 NA non-coding downstream 38217 17816159 ~ 17821883 (-)
G1044553 NA non-coding downstream 44893 17814974 ~ 17815207 (-)
G1044552 NA non-coding downstream 46357 17813470 ~ 17813743 (-)
G1044592 NA non-coding upstream 62433 17925820 ~ 17926330 (-)
G1044596 NA non-coding upstream 66468 17929855 ~ 17930090 (-)
G1044604 NA non-coding upstream 83897 17947284 ~ 17947534 (-)
G1044619 NA non-coding upstream 107203 17970590 ~ 17970854 (-)
G1044620 NA non-coding upstream 108591 17971978 ~ 17972434 (-)
G1044482 NA other downstream 162995 17696129 ~ 17697105 (-)
LOC110537077 LOC106568284 other downstream 792215 17065241 ~ 17068020 (-)
LOC110537061 LOC106568319 other downstream 1315374 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 other downstream 1531986 16324956 ~ 16328168 (-)
G1042500 NA other downstream 1755217 16104163 ~ 16104883 (-)
G1044649 LOC106568140 other upstream 154717 18018104 ~ 18018758 (-)
G1044671 NA other upstream 192724 18056111 ~ 18058392 (-)
G1044692 NA other upstream 234176 18097563 ~ 18099722 (-)
G1044761 NA other upstream 328847 18192234 ~ 18193223 (-)
LOC110537121 LOC106568150 other upstream 583294 18439759 ~ 18458056 (-)

Expression


Co-expression Network