LOC100135895 (LOC100135895)


Basic Information

Item Value
gene id LOC100135895
gene name LOC100135895
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17935728 ~ 17940707 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124267.1
CCAAACTGAACTGTGCTGTTCCTCCTTTGGCATCCAAGAGAATAGTGAGCAGCTCTCATCCTCCTGACTAACTACTCTAGAGTTATCCTGTGGATTCTCTGAAGAACAagtcaagATACACCTTGTGACAATGAAGGCTGCAATTGTTTTCGTCCTGCTCTTTGCAACGGTCCTCGGTCGCCCAGCGATACGCTCGCCCGGCAACAATCCAGAGAGCTTAGAAGAACTGGTGAAACCAGCTCCAGTGCTTGGGATAGCCCCAGCAGAACTTACTGAGGTGGCCCCTGTACAGaatgtagaTACTGCTACAACATCAGACGAGAGCTCCGACAAAGATGAAACAGAGGGAGCTGATCCAACTTCAGACCCAACATCAGACAGTGCAGACAGCGCAGACAGCGCAGACAGCGCAGACAGCGCAGACAGCGATGACACAGACGAGTCCAGTGAGTCAGAGGAGGCAGACACCACCGCTGCCCCTGCAACAGCTGAGCCAACCGTAGAGCCCACAATGGCTACCACTGAGGCCCCCATTTACGATGACGGACGTGGAGACAGCATGGGTTACCCCAGCGACTACAAGAAGTCTATCATCTATGTAGATACTAACAACATCGAGAAGGGACCCTCTCCTTACAAATCCCATGGAAAGATAGATGAGGGCATGTATGCTGGCAAAAAGGTGTCCGTCTACAACACCGGGCTCGGAAACAAGATTGAGAAGACGATGACAGTGTTCAAGgcCCTGCAGGTGCATGATTTGATGGAGGAGGACACCAGCACCCCTGACGTGGAGAGCCAGGTTCTGGACGCCTCCAGCGGGAAAGCCGAGGAGTCCAGCATGCGCAAGGCGCATGTCGACGTAGCCAGCCAGGACAGGACCCCCTCTGAGAGCCCAGAGAGCCAGAAGGCCAAGAGCCTGGAGAGTGATGCCACCAGTGAGCTCACCAGTAGCGCTAGCAGCGATGGTACTAGCGAGAGCACCAGCACCAGCGCCAGTAATGagactgacagcagcaacagtagtgaGGAAGCTACAGCCAGGCCTGGGGCAGCAGACAGCGACTCAGCAGAGAGCAACGAGAGCCATGACAGTGACAGCGACTCGGCTGAGGAGGCAGCCACAGTGGCTACCATTACTACCGATGCTCCCATTGTCATCACTGCCAAGTAAAGGCCTGTCTCTCTCATCCTGCTGCTGTCGACAGTGAAGAATGCTACCAGGACCTGGAAGGTGCTCTATGACCCTGCCTTAGGAGGAGAGGTCAAAACGGAGAGAATAACAGAAAACATATAAGCACAACTTAGGGTCTGATACAGTACAACAATAATACATGATAAGATTCATACTAGCTATCTCATCATGACATATAGAGCAGTCAATTTTGTTCAATTGCACAATTATTTACACTACATGTTGTTTGTCCCATTTTTACTGTAATAATGTATAACGTTGTATCAGTCCTAAATACATGcattctttttttccataaaa

Function

NR:

description
osteopontin-like protein precursor

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124267.1 True 1495 mRNA 0.51 7 17935728 17940707

Neighbor

gene id symbol gene type direction distance location
LOC110537109 pp2bc coding downstream 22759 17891894 ~ 17912969 (-)
LOC110537108 LOC106563398 coding downstream 72341 17860100 ~ 17863387 (-)
LOC110536806 LOC106568132 coding downstream 127216 17753963 ~ 17808512 (-)
LOC110537102 LOC106568267 coding downstream 206484 17721177 ~ 17729244 (-)
LOC110537100 LOC106568268 coding downstream 225491 17681785 ~ 17710237 (-)
LOC118937764 NA coding upstream 21269 17961976 ~ 17964065 (-)
LOC110537114 NA coding upstream 128943 18069650 ~ 18079512 (-)
LOC110537117 LOC106568145 coding upstream 159326 18100033 ~ 18100881 (-)
LOC110537118 LOC106568147 coding upstream 349263 18289970 ~ 18297738 (-)
LOC110537119 LOC106568149 coding upstream 396144 18336851 ~ 18387113 (-)
G1044596 NA non-coding downstream 5638 17929855 ~ 17930090 (-)
G1044592 NA non-coding downstream 9398 17925820 ~ 17926330 (-)
G1044559 NA non-coding downstream 106408 17828858 ~ 17829320 (-)
G1044558 NA non-coding downstream 106983 17828467 ~ 17828745 (-)
G1044555 NA non-coding downstream 113845 17816159 ~ 17821883 (-)
G1044604 NA non-coding upstream 6577 17947284 ~ 17947534 (-)
G1044619 NA non-coding upstream 29883 17970590 ~ 17970854 (-)
G1044620 NA non-coding upstream 31271 17971978 ~ 17972434 (-)
G1044621 NA non-coding upstream 31910 17972617 ~ 18012465 (-)
G1044647 NA non-coding upstream 76489 18017196 ~ 18017417 (-)
G1044482 NA other downstream 238623 17696129 ~ 17697105 (-)
LOC110537077 LOC106568284 other downstream 867843 17065241 ~ 17068020 (-)
LOC110537061 LOC106568319 other downstream 1391002 16417638 ~ 16549073 (-)
LOC110537059 LOC106568318 other downstream 1607614 16324956 ~ 16328168 (-)
G1042500 NA other downstream 1830845 16104163 ~ 16104883 (-)
G1044649 LOC106568140 other upstream 77397 18018104 ~ 18018758 (-)
G1044671 NA other upstream 115404 18056111 ~ 18058392 (-)
G1044692 NA other upstream 156856 18097563 ~ 18099722 (-)
G1044761 NA other upstream 251527 18192234 ~ 18193223 (-)
LOC110537121 LOC106568150 other upstream 505974 18439759 ~ 18458056 (-)

Expression


Co-expression Network