LOC110539121 (LOC106608263)


Basic Information

Item Value
gene id LOC110539121
gene name LOC106608263
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 17964267 ~ 17965587 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626095.2
GAGGTGCAACCAAAACAGCTGTTAGACATTGCAACAGGGATATTCTGGCAGGGtgtctggctagcattagttctGAATACGGTTGTGGTTTTGATCACTAAAATGGCTGTGACTTTTGGACTCTTTTTGAGTGTTTCTTGGCTTTGTTGCCTGCTAATTGGAGGGATAAAGTGTCTTCCACTTCAAGGTGATGCTTATGGGCATCCTGCCTGCACTGGACCTGAACCAACTGGATCCCAAGCAAGTGTGGTGTCTGGTCCAAATGCTAAAGCTACTGGCTACAATACCCTGGCAAGTGTGACGCATGGTCCAAATGCCACAGCTGAAGCAACTGCCAACCATGCCTCTGCAGAAGCGGCCCGCGCCTCAGCTGAAGCAACTGCCAACCATGCCTCTGTAGAAGCGGCCCGCGCCTCAGCTGAAGCAACTGCCAACCACGCCTCTGCAGAAGCGGCTGGCCCCCACGCCTCAGCTGAAGCAACTGCCAAACACACCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATGCCTCTGCGGAAGCGGCCGCCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATACCTCTGCGGAAGCGGCCGGCGGCCCCGGCGCCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATGCCGCCGGCCCCCGCGCCTCAGCTGAAGCAACTGTCAAACATGCCGCCGGCCCCCGCACCTCTGCGGAAGCGGCCGGCCTTGAACAGACGGCCCGACCCCTCAACAAGCTAGATAGGGAGATCATAATTTGGTTTGCCCAACTCCTTAATCGTCTTTCCCCTGTTACTGTGCCTCCATTTGAAAAGGGCAAAGGTAACTGAGGTGAGGAATTGTGCAAACTAATGCGCTTGTTTGAAATGAGGATTTCCTTCACTTGCTCATCGTTATGCAAATTGTTTACAGGGGTGAACACTACAATGGTATGGTtttgaaaaaaaaatcatacGACTAAAATTTACATCTGATTTGGCCACTattacagacacttaggttgtACGGTTATGATTTGTCCTGGTGTTCCTGCTACTTTGCATGATTTGTTCAATAAACAATTTGACATCCAAAA
>XM_036939649.1
GAGGTGCAACCAAAACAGCTGTTAGACATTGCAACAGGGATATTCTGGCAGGGtgtctggctagcattagttctGAATACGGTTGTGGTTTTGATCACTAAAATGGCTGTGACTTTTGGACTCTTTTTGAGTGTTTCTTGGCTTTGTTGCCTGCTAATTGGAGGGATAAAGTGTCTTCCACTTCAAGGTGATGCTTATGGGCATCCTGCCTGCACTGGACCTGAACCAACTGGATCCCAAGCAAGTGTGGTGTCTGGTCCAAATGCTAAAGCTACTGGCTACAATACCCTGGCAAGTGTGACGCATGGTCCAAATGCCACAGCTGAAGCAACTGCCAACCATGCCTCTGCAGAAGCGGCCCGCGCCTCAGCTGAAGCAACTGCCAACCATGCCTCTGTAGAAGCGGCCCGCGCCTCAGCTGAAGCAACTGCCAACCACGCCTCTGCAGAAGCGGCTGGCCCCCACGCCTCAGCTGAAGCAACTGCCAAACACACCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATGCCTCTGCGGAAGCGGCCGCCGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATACCTCTGCGGAAGCGGCCGGCGGCCCCGGCGCCTCTGCAGAAGCGGCTGGCCCCCGCGCCTCAGCTGAAGCAACTGCCAAACATGCCGCCGGCCCCCGCGCCTCTGCGGAAGCGGCCGGCCTTGAACAGACGGCCCGACCCCTCAACAAGCTAGATAGGGAGATCATAATTTGGTTTGCCCAACTCCTTAATCGTCTTTCCCCTGTTACTGTGCCTCCATTTGAAAAGGGCAAAGGTAACTGAGGTGAGGAATTGTGCAAACTAATGCGCTTGTTTGAAATGAGGATTTCCTTCACTTGCTCATCGTTATGCAAATTGTTTACAGGGGTGAACACTACAATGGTATGGTtttgaaaaaaaaatcatacGACTAAAATTTACATCTGATTTGGCCACTattacagacacttaggttgtACGGTTATGATTTGTCCTGGTGTTCCTGCTACTTTGCATGATTTGTTCAATAAACAATTTGACATCCAAAA

Function

NR:

description
uncharacterized protein LOC109879448 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626095.2 False 1133 mRNA 0.53 3 17964267 17965587
XM_036939649.1 True 1091 mRNA 0.52 4 17964267 17965587
Loading

Neighbor

gene id symbol gene type direction distance location
LOC118937634 NA coding upstream 73137 17888059 ~ 17891148 (+)
LOC110537106 LOC106568134 coding upstream 77742 17863517 ~ 17886525 (+)
LOC110537103 xpo7 coding upstream 106148 17831222 ~ 17858119 (+)
LOC110537101 LOC106562742 coding upstream 246538 17714160 ~ 17717729 (+)
LOC110537098 pi4ka coding upstream 300589 17618250 ~ 17663678 (+)
LOC110539122 NA coding downstream 2999 17968586 ~ 17969508 (+)
LOC110537111 LOC106568140 coding downstream 31215 17996802 ~ 18024180 (+)
LOC100136065 LOC100136065 coding downstream 60002 18025589 ~ 18062043 (+)
LOC110537112 LOC106568253 coding downstream 97820 18063407 ~ 18067416 (+)
LOC118937635 NA coding downstream 113451 18079038 ~ 18081037 (+)
G1044127 NA non-coding upstream 8531 17955406 ~ 17955736 (+)
G1044107 NA non-coding upstream 53016 17910084 ~ 17911251 (+)
G1044070 NA non-coding upstream 69757 17893306 ~ 17894510 (+)
G1044042 NA non-coding upstream 189643 17773725 ~ 17774624 (+)
G1044164 NA non-coding downstream 49716 18015303 ~ 18015599 (+)
LOC110537116 LOC106568146 non-coding downstream 69721 18035308 ~ 18099702 (+)
G1044193 NA non-coding downstream 81923 18047510 ~ 18047862 (+)
G1044176 NA non-coding downstream 292451 18258038 ~ 18283053 (+)
G1044056 NA other upstream 76350 17886653 ~ 17887917 (+)
G1044002 NA other upstream 235013 17721093 ~ 17729254 (+)
G1043449 tmed2 other upstream 685149 17275268 ~ 17279118 (+)
G1043245 NA other upstream 972922 16909786 ~ 16991345 (+)
G1041576 yo84 other upstream 2355815 15604625 ~ 15608452 (+)
G1044201 NA other downstream 110215 18075802 ~ 18077300 (+)
G1044265 NA other downstream 330343 18295930 ~ 18296402 (+)
G1044317 NA other downstream 427059 18392646 ~ 18393341 (+)
G1045418 NA other downstream 999981 18965568 ~ 18965942 (+)
G1046724 NA other downstream 2178592 20144179 ~ 20147414 (+)

Expression

LOC110539121(LOC106608263) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 300.
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LOC110539121(LOC106608263) Expression in each Bioproject

Bar chart with 10 bars.
LOC110539121(LOC106608263) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 300.
End of interactive chart.

Co-expression Network