LOC110537119 (LOC106568149)


Basic Information

Item Value
gene id LOC110537119
gene name LOC106568149
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18336851 ~ 18387113 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622904.2
CACTGCGCTTGATGAAGTGGTGGGGGTGGGACTAACTGAAGTCCATCCAGGAAGCGTTTTGCTGAATACTTTCAGTTGCCATCGAGATATCGCGATGAGATAGCAGTAATGTGATAGTTCTGTGTAATACAATATGCCAGTTTTTAGAAAAAACTAAACACATTTCGTAACGTTAATAATGAGTTTTTTTTCCGGAGTTTGTTTTCATGGCATAGTTAGACAAATAGCCATGTGTATCGTCAACCTTGTTGCAGAATTGATCAATAGTATATGCAGAATAGATGCAGAATAAGTGTTGTTTTGGACCATCTGTTGTCTAATCCAACAACTGTGTGGTTTAATTTACCACTGAACTAACCCCAGCAGTAAACTCATTTTAAATAATGTCGAAACTAGTGGGCACTGCGGGGGTCTCTGTGTTGGGCGACAAATCTTTGGAGTTTTACCGAGATCCAGTGGCTTTTTGTGAACAACGTATTGAAAAGCATGGGTCACGGATATTTCAATCAAGACTTCTGAACAAACCAACTTCCTTCGTCTGTTCGGTGGAAGGGATGAAGGAATTACTTTGCGAGAAGTCTTCTGTGTTCCTGAAAGACCCCACTGATGTAATGCACAACATGTATGGAGACAACATAGTGACTGCTAATGGCGAGGAAGCCTGCTTGCTGCGTCTGTCTCTCACCAACCTTTTCACAGGAAAGTGTCTGGCCTCAGGCTCTGACCTCATTAACAGTGTTTCTGAACGGTGCTTGAAGAACCTTTCTGCAACTGGGGAGCCCGTGTCGGTGTACCCTCTGTTTAAACGACTGGGAACAGAACTGGTGTTGGGGCTGTTCCTGAATGTGAACCCAGATGAGACACCAGAGCTTTTCCAGGAAATTACAGCACTCTGTACCCTACACTGGCATGGGATCATCTCAACTCCAATCAGTGTGAAGGTTCCTCTGTGGTCCTCTGGCTTTTGCACAGCGCTGGAGGCTAAAGACAAGCTCATGGACATCATTAAAGACAAGCTGGAGTGTCAGAGACAGGGGTTTGTAGGTTATCTCCGTGATCTACCTCTCCCTGATGCCAGTTGTGCCTCCCAGCATCTGCTGTTGTTCATCTCTGCTCTGATCCCCAAAGCCCTGGCATCCTTACTCACCTCCTTCACCCTGGTTCTGAGTGGCGCAGGCAAGaAGGAAATTAGGAATCGTGCGAGGGCAGACCCTGATTACCTTTACTACGTCCTCCTGGAAGTACAGAGACTTTGGCCTCCGTTCATTGGTGGAAGGAGAATAGCCAATCAAGACACTACTCTGGGAGGCTTCCACATTCCCAAGGCTTACGCTGCCATGTACATCAGCCACGCCATCCACCGTGACCCGGAAGTGTTCCACCAGCCAGAGGACTTCCTGCCAGAGAGGTGGTGTGGAAGAAACGCAGGACAGGAGCACCTCCTCTGCAGCCTAGGCAACGGCCCCAGGAACTGCATCGGAGTCCAGCTGAACAACGTCTTTCTCAAGGTAGCGTGTGGGTACCTGCTCCAGCACTATGATTGGGACCTGAGTCCCTACTCACAGGACCTCCAGTACAAATGGTTGCCTGTGTCCCGGCCCACTGTCCCTCCAATGGTGAGCTTCACTGAGCTGGAGCTGGAGAGCAGTGCCACAGACCTGCCTGATGGTCCACCCTAAAGACCAAAGCATGGACACTGAGAGGCAGGTGGATAGGACGAAGAGAGGCCCCACTGTAGCAGTGGTCCTAATGGTCTCTCAAGGACACCAGTATGTGCAGATCTTAGTTATTACCCTTCCCTCGATCTTCCTGTACTGATTTAAAGATAATGTTGATATGGATCACTGTTCACATACTGTTCACATACAATACTGTATATTGTCCAGAACGGGACTGAAAACAGTGACAGtgtcatacagttgaagtcggaagtttacatacacctagtcaaatacatttaaactcagtttttcacaattcctgacatttaatctgagtaaaaattcccgtcaccactttattttaagaatgtgaaat
>XM_036937111.1
GGCACTGCGCTTGATGAAGTGGTGGGGGTGGGACTAACTGAAGTCCATCCAGGAAGCGTTTTGCTGAATACTTTCAGTTGCCATCGAGATATCGCGATGAGATAGCAGTAATGTGATAGTTCTGTGTAATACAATATGCCAGTTTTTAGAAAAAACTAAACACATTTCGTAACGTTAATAATGAGTTTTTTTTCCGGAGTTTGTTTTCATGGCATAGTTAGACAAATAGCCATGTGTATCGTCAACCTTGTTGCAGAATTGATCAATAGTATATGCAGAATAGATGCAGAATAAGTGTTGTTTTGGACCATCTGTTGTCTAATCCAACAACTGTGTGGTTTAATTTACCACTGAACTAACCCCAGCAGTAAACTCATTTTAAATAATGTCGAAACTAGTGGGCACTGCGGGGGTCTCTGTGTTGGGCGACAAATCTTTGGAGTTTTACCGAGATCCAGTGGCTTTTTGTGAACAACGTATTGAAAAGCATGGGTCACGGATATTTCAATCAAGACTTCTGAACAAACCAACTTCCTTCGTCTGTTCGGTGGAAGGGATGAAGGAATTACTTTGCGAGAAGTCTTCTGTGTTCCTGAAAGACCCCACTGATGTAATGCACAACATGTATGGAGACAACATAGTGACTGCTAATGGCGAGGAAGCCTGCTTGCTGCGTCTGTCTCTCACCAACCTTTTCACAGGAAAGTGTCTGGCCTCAGGCTCTGACCTCATTAACAGTGTTTCTGAACGGTGCTTGAAGAACCTTTCTGCAACTGGGGAGCCCGTGTCGGTGTACCCTCTGTTTAAACGACTGGGAACAGAACTGGTGTTGGGGCTGTTCCTGAATGTGAACCCAGATGAGACACCAGAGCTTTTCCAGGAAATTACAGCACTCTGTACCCTACACTGGCATGGGATCATCTCAACTCCAATCAGTGTGAAGGTTCCTCTGTGGTCCTCTGGCTTTTGCACAGCGCTGGAGGCTAAAGACAAGCTCATGGACATCATTAAAGACAAGCTGGAGTGTCAGAGACAGGGGTTTGTAGGTTATCTCCGTGATCTACCTCTCCCTGATGCCAGTTGTGCCTCCCAGCATCTGCTGTTGTTCATCTCTGCTCTGATCCCCAAAGCCCTGGCATCCTTACTCACCTCCTTCACCCTGGTTCTGAGTGGCGCAGGCAAGGAAATTAGGAATCGTGCGAGGGCAGACCCTGATTACCTTTACTACGTCCTCCTGGAAGTACAGAGACTTTGGCCTCCGTTCATTGGTGGAAGGAGAATAGCCAATCAAGACACTACTCTGGGAGGCTTCCACATTCCCAAGGCTTACGCTGCCATGTACATCAGCCACGCCATCCACCGTGACCCGGAAGTGTTCCACCAGCCAGAGGACTTCCTGCCAGAGAGGTGGTGTGGAAGAAACGCAGGACAGGAGCACCTCCTCTGCAGCCTAGGCAACGGCCCCAGGAACTGCATCGGAGTCCAGCTGAACAACGTCTTTCTCAAGGTAGCGTGTGGGTACCTGCTCCAGCACTATGATTGGGACCTGAGTCCCTACTCACAGGACCTCCAGTACAAATGGTTGCCTGTGTCCCGGCCCACTGTCCCTCCAATGGTGAGCTTCACTGAGCTGGAGCTGGAGAGCAGTGCCACAGACCTGCCTGATGGTCCACCCTAAAGACCAAAGCATGGACACTGAGAGGCAGGTGGATAGGACGAAGAGAGGCCCCACTGTAGCAGTGGTCCTAATGGTCTCTCAAGGACACCAGTATGTGCAGATCTTAGTTATTACCCTTCCCTCGATCTTCCTGTACTGATTTAAAGATAATGTTGATATGGATCACTGTTCACATACTGTTCACATACAATACTGTATATTGTCCAGAACGGGACTGAAAACAGTGACAGtgtcatacagttgaagtcggaagtttacatacacctagtcaaatacatttaaactcagtttttcacaattcctgacatttaatctgagtaaaaattcccgtcaccactttattttaagaatgtgaaat

Function

NR:

description
uncharacterized protein LOC110537119

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622904.2 False 2037 mRNA 0.47 11 18336851 18387111
XM_036937111.1 True 2036 mRNA 0.47 11 18336851 18387113

Neighbor

gene id symbol gene type direction distance location
LOC110537118 LOC106568147 coding downstream 39113 18289970 ~ 18297738 (-)
LOC110537117 LOC106568145 coding downstream 235970 18100033 ~ 18100881 (-)
LOC110537114 NA coding downstream 257339 18069650 ~ 18079512 (-)
LOC118937764 NA coding downstream 372786 17961976 ~ 17964065 (-)
LOC100135895 LOC100135895 coding downstream 396144 17935728 ~ 17940707 (-)
LOC110537121 LOC106568150 coding upstream 52646 18439759 ~ 18458056 (-)
LOC100136215 s26a2 coding upstream 71634 18458747 ~ 18471430 (-)
rbp4l purp coding upstream 99226 18486339 ~ 18488673 (-)
LOC110537126 fyb coding upstream 126435 18513211 ~ 18538625 (-)
LOC118937637 LOC106611709 coding upstream 158672 18545785 ~ 18558011 (-)
G1044812 NA non-coding downstream 36469 18300130 ~ 18300382 (-)
G1044805 NA non-coding downstream 65702 18258031 ~ 18271149 (-)
G1044804 NA non-coding downstream 78964 18255202 ~ 18257887 (-)
G1044780 NA non-coding downstream 125645 18210869 ~ 18211206 (-)
G1044848 NA non-coding upstream 7957 18395070 ~ 18395373 (-)
G1044861 NA non-coding upstream 29173 18416286 ~ 18416524 (-)
G1044867 NA non-coding upstream 35720 18422833 ~ 18452696 (-)
G1044924 NA non-coding upstream 161101 18548214 ~ 18548590 (-)
G1044761 NA other downstream 143628 18192234 ~ 18193223 (-)
G1044692 NA other downstream 237129 18097563 ~ 18099722 (-)
G1044671 NA other downstream 278459 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 318093 18018104 ~ 18018758 (-)
G1044482 NA other downstream 639746 17696129 ~ 17697105 (-)
G1045201 NA other upstream 426789 18813902 ~ 18815394 (-)
LOC110537130 LOC106568157 other upstream 472749 18833119 ~ 18907377 (-)
LOC110537144 LOC106568168 other upstream 1169165 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1526726 19893417 ~ 19938584 (-)

Expression


Co-expression Network