LOC110537121 (LOC106568150)


Basic Information

Item Value
gene id LOC110537121
gene name LOC106568150
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18439759 ~ 18458056 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622906.2
GGGAGTGTCATTAGTGAATAGCACCATTGCTTCGTCGCGGTTATAATGACAATTCAAACCAGCCAGCCACACGTCTTTTTAATTTAATGTAAAACATTTATATTCGTCAATAGCTACCTAGTTTTCAGAGCAGCTAACGTTATGTCAAGCCGGAGGAGTGAAGCCCTGGCTTTCTCTCTAGTGACGGGTATAAACCATGCCATGGCCAAGCTGGTGGACATCTGGGACAGCATGGGCATCATGGAGGAGCAGAGGGTAGAGCGGATGGAGACGGTGAAGAAACACATTGAGGGCCTTTTGAATGACATGATCACTGAGGAAGAAGCTTTGAAGCACCGCATCCGAACCAATATCATCACTTTTGAAAAACAGTTGGATACCTTGTGTCTGGAAATGTCAATGGATCCATACAAATTTGAGGAGGGCCTGACAGTCCTCCAGATCGAGAAGAATCTGCGTCTGCGTGTGGAGGTTCTGACCAAGGAGAAGGTGGACCGTTTGAAGGAGTTACACGGACTGCAGCAGCAGGATAAGGAACTGTGCTTGGAGCTGTGCGTCACTCCCTATTATGCTCCCACAGGCAGCATACCCTCACGCACTCAGTTGCAGGAGTTCCGGGAGCACCTCAAGACCCTCAGTGAAGAAAAGAAGAGTCGTGCAAAGGTGTTTTCAGGGCTGCGTGAGGACATCAGGAAGCTCATGGAGGACATGGGTCAGAAACCAGAAACCAGTCTGGAGAAAGAGTCGGTGTGTCATGGCGAGGAGATATTCCTGCTCACGCATGAAAACATCAAAGCCCTCCAACTGCTGTTGTCCCAGATGAAGGTCAAGAAGGAATCCCTGATGAATACTCTGGCTGAGCTGAAAGAACGAGCTATGTGCCTGTGGAATCGTCTGGAAGCGCTGGAGCAAGATCGCACTGCGTTCCAGGAGAGTGTGCAGGGTACCCTTTCTGACCAAATCACACAGTGGCAGGGGGAGGTTGATCGTCTGACAGTCCTGCAGAAAGCCATGTTGGAGGATGTGATTGACAAGGTCCGACAGGAACTAGTGGCTCTCTGGGACAAGTGCAACCAGGGCACTGAGCAGCGTGAACCCTTCAACGCCCACATCTGTGACGATGACTTCACAGAGGAATTGTTGGCACTGCATGATGCTGAGCTATTGAAGGTGAAGAATTACTATGACCTGGCTAAACCCTTACTGGAGGTTCTGCAGAAATGGGAGAAGTACTGGGCCCTCTTCCAGGACTTTGAGAAAAAGGCCAATGATCCAAACCGCTTCTCCAACAGAGGAGGAGCCCTTCTCAAAGATGCCAAAGAGAAGGTCAAAGTTCAGAAGATGTTGCCAAAGTTGGAGGAAGAGCTGAGGACTGGTGTTGAGAGCTGGGAGAAGGACCAGGGTACTGCCTTCCTGGTCCAGGGCCAGAGAGTCATGACCTACATCTCCACCCAATGGGAGGAGCACAAACAGCTGAGGGGCAAGGAGAAGAGTGAACGTGCCACTACATCAAAGAAGGGGGAAATGACAACTCTCTTCAAAACTCCCACGAAGAGGGCCCATGGCGGGATGAACACCCTCACCCCCAACAAGATCAGGAAGCAGACTCCTACACAGCCTATCATGGTGCGCTCCTACAGCTGCAACTCATCCAGCACATTCATCAGTGTGCCTAGCAGCaagcctcctctctcccagattcagatgcagAAAACCAAGTCCCTTGAGAGAAGCAGCGGTAGTCAGAGAACACCCCTGCAGGAGTACAACGGTACAGAGGAGAAAAAACCTGTTGACATCAGCTACTCTGACTTCACTGGTGACCTGTCCAAAAAGACAAATGATGCCATTTTCAATTcgacagcaaaggaccttttcTGATTTTCTCATGATGGTCCTCATGTTTTAAGATGTGCGTGTGGACAATTCACCCCGCACAGGTTGTGTTGTGTCCACTTGGCACTCCtctcgtgtgtgtatatatggccGGTGTTTGTAATGGTCAGTGAGCATTTCAGGTCTTTGTTATCTTGATGTAAATCATTTTTTGTAGTTGGTGTTGCTGTTACTTTGAAATGTGACCAGTTTAGCCTTTTTGTAATGCTTATTTTTGGACACCCTGTATGGAAGTGAATAGGTCTAAAGGGACTCTGTATGTGTCAGGTGTGGATGAAACATCATAAAGCCATGTTTTCCAGTTATTAATACTGTGCAGTCCAGGGAAGTGAATCACAAGTTTGATACGGTAGAGCCCCTTAGATGTTACATGCAGTACTTTTGATATTCCTTTTGATATTTGACTTGTTTATAAATGGCCAGGCTCCACCGGAGGAAGCATCCTGTTTTGATACAGACCTTCCAGCACAACAACATGCAGCTCTTTCTGTATGTAAATATTGCTCTCTTGAAAATATACTTTTCTTATTGCACATACGGTATTGACAATGTGTTTTGTCTTGACGTGTGCGTTGTCTTGTCAACATGTgcctgtttttattttatattttttgacttaattaataaatatatatatttcaatgaCA
>XM_021622907.2
GGGAGTGTCATTAGTGAATAGCACCATTGCTTCGTCGCGGTTATAATGACAATTCAAACCAGCCAGCCACACGTCTTTTTAATTTAATGTAAAACATTTATATTCGTCAATAGCTACCTAGTTTTCAGAGCAGCTAACGTTATGTCAAGCCGGAGGAGTGAAGCCCTGGCTTTCTCTCTAGTGACGGGTATAAACCATGCCATGGCCAAGCTGGTGGACATCTGGGACAGCATGGGCATCATGGAGGAGCAGAGGGTAGAGCGGATGGAGACGGTGAAGAAACACATTGAGGGCCTTTTGAATGACATGATCACTGAGGAAGAAGCTTTGAAGCACCGCATCCGAACCAATATCATCACTTTTGAAAAACAGTTGGATACCTTGTGTCTGGAAATGTCAATGGATCCATACAAATTTGAGGAGGGCCTGACAGTCCTCCAGATCGAGAAGAATCTGCGTCTGCGTGTGGAGGTTCTGACCAAGGAGAAGGTGGACCGTTTGAAGGAGTTACACGGACTGCAGCAGCAGGATAAGGAACTGTGCTTGGAGCTGTGCGTCACTCCCTATTATGCTCCCACAGGCAGCATACCCTCACGCACTCAGTTGCAGGAGTTCCGGGAGCACCTCAAGACCCTCAGTGAAGAAAAGAAGAGTCGTGCAAAGGTGTTTTCAGGGCTGCGTGAGGACATCAGGAAGCTCATGGAGGACATGGGTCAGAAACCAGAAACCAGTCTGGAGAAAGAGTCGGTGTGTCATGGCGAGGAGATATTCCTGCTCACGCATGAAAACATCAAAGCCCTCCAACTGCTGTTGTCCCAGATGAAGGTCAAGAAGGAATCCCTGATGAATACTCTGGCTGAGCTGAAAGAACGAGCTATGTGCCTGTGGAATCGTCTGGAAGCGCTGGAGCAAGATCGCACTGCGTTCCAGGAGAGTGTGCAGGGTACCCTTTCTGACCAAATCACACAGTGGCAGGGGGAGGTTGATCGTCTGACAGTCCTGCAGAAAGCCATGTTGGAGGATGTGATTGACAAGGTCCGACAGGAACTAGTGGCTCTCTGGGACAAGTGCAACCAGGGCACTGAGCAGCGTGAACCCTTCAACGCCCACATCTGTGACGATGACTTCACAGAGGAATTGTTGGCACTGCATGATGCTGAGCTATTGAAGGTGAAGAATTACTATGACCTGGCTAAACCCTTACTGGAGGTTCTGCAGAAATGGGAGAAGTACTGGGCCCTCTTCCAGGACTTTGAGAAAAAGGCCAATGATCCAAACCGCTTCTCCAACAGAGGAGGAGCCCTTCTCAAAGATGCCAAAGAGAAGGTCAAAGTTCAGAAGATGTTGCCAAAGTTGGAGGAAGAGCTGAGGACTGGTGTTGAGAGCTGGGAGAAGGACCAGGGTACTGCCTTCCTGGTCCAGGGCCAGAGAGTCATGACCTACATCTCCACCCAATGGGAGGAGCACAAACAGCTGAGGGGCAAGGAGAAGAGTGAACGTGCCACTACATCAAAGAAGGGGGAAATGACAACTCTCTTCAAAACTCCCACGAAGAGGGCCCATGGCGGGATGAACACCCTCACCCCCAACAAGATCAGGAAGACTCCTACACAGCCTATCATGGTGCGCTCCTACAGCTGCAACTCATCCAGCACATTCATCAGTGTGCCTAGCAGCaagcctcctctctcccagattcagatgcagAAAACCAAGTCCCTTGAGAGAAGCAGCGGTAGTCAGAGAACACCCCTGCAGGAGTACAACGGTACAGAGGAGAAAAAACCTGTTGACATCAGCTACTCTGACTTCACTGGTGACCTGTCCAAAAAGACAAATGATGCCATTTTCAATTcgacagcaaaggaccttttcTGATTTTCTCATGATGGTCCTCATGTTTTAAGATGTGCGTGTGGACAATTCACCCCGCACAGGTTGTGTTGTGTCCACTTGGCACTCCtctcgtgtgtgtatatatggccGGTGTTTGTAATGGTCAGTGAGCATTTCAGGTCTTTGTTATCTTGATGTAAATCATTTTTTGTAGTTGGTGTTGCTGTTACTTTGAAATGTGACCAGTTTAGCCTTTTTGTAATGCTTATTTTTGGACACCCTGTATGGAAGTGAATAGGTCTAAAGGGACTCTGTATGTGTCAGGTGTGGATGAAACATCATAAAGCCATGTTTTCCAGTTATTAATACTGTGCAGTCCAGGGAAGTGAATCACAAGTTTGATACGGTAGAGCCCCTTAGATGTTACATGCAGTACTTTTGATATTCCTTTTGATATT
>TU1190787
gcagacaattacatagATTCTGtcaatctgcaatattaaagccgATCTACCTcctaaaaaaatattgtttttgcaGTGCTTGGTTTCAAACTGTATACCAATAATTGGTATCCTGTTCAGATTTGTTAGGCAATGTGTTTGCTACTTAGCCAGCTGAAGTTACCAAATGTGATGGTCATGTCACTCATCTCTGCAGTGAAGCCCTGGCTTTCTCTCTAGTGACGGGTATAAACCATGCCATGGCCAAGCTGGTGGACATCTGGGACAGCATGGGCATCATGGAGGAGCAGAGGGTAGAGCGGATGGAGACGGTGAAGAAACACATTGAGGGCCTTTTGAATGACATGATCACTGAGGAAGAAGCTTTGAAGCACCGCATCCGAACCAATATCATCACTTTTGAAAAACAGTTGGATACCTTGTGTCTGGAAATGTCAATGGATCCATACAAAGTAAGTGGTTATTTCTTC

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622906.2 False 2543 mRNA 0.47 14 18439759 18458056
XM_021622907.2 False 2294 mRNA 0.48 14 18440005 18458056
TU1190787 True 470 TUCP 0.43 2 18446681 18447251

Neighbor

gene id symbol gene type direction distance location
LOC110537119 LOC106568149 coding downstream 52646 18336851 ~ 18387113 (-)
LOC110537118 LOC106568147 coding downstream 142021 18289970 ~ 18297738 (-)
LOC110537117 LOC106568145 coding downstream 338878 18100033 ~ 18100881 (-)
LOC110537114 NA coding downstream 360247 18069650 ~ 18079512 (-)
LOC118937764 NA coding downstream 475694 17961976 ~ 17964065 (-)
LOC100136215 s26a2 coding upstream 691 18458747 ~ 18471430 (-)
rbp4l purp coding upstream 28283 18486339 ~ 18488673 (-)
LOC110537126 fyb coding upstream 55492 18513211 ~ 18538625 (-)
LOC118937637 LOC106611709 coding upstream 87729 18545785 ~ 18558011 (-)
ccdc80l2 LOC106568154 coding upstream 102700 18560756 ~ 18566092 (-)
G1044861 NA non-coding downstream 23235 18416286 ~ 18416524 (-)
G1044848 NA non-coding downstream 44386 18395070 ~ 18395373 (-)
G1044817 NA non-coding downstream 93244 18312585 ~ 18346515 (-)
G1044812 NA non-coding downstream 139377 18300130 ~ 18300382 (-)
G1044924 NA non-coding upstream 90158 18548214 ~ 18548590 (-)
G1045141 NA non-coding upstream 305864 18763920 ~ 18767027 (-)
G1045161 NA non-coding upstream 328251 18786307 ~ 18786571 (-)
G1045172 NA non-coding upstream 333965 18792021 ~ 18792235 (-)
G1044761 NA other downstream 246536 18192234 ~ 18193223 (-)
G1044692 NA other downstream 340037 18097563 ~ 18099722 (-)
G1044671 NA other downstream 381367 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 421001 18018104 ~ 18018758 (-)
G1044482 NA other downstream 742654 17696129 ~ 17697105 (-)
G1045201 NA other upstream 355846 18813902 ~ 18815394 (-)
LOC110537130 LOC106568157 other upstream 401806 18833119 ~ 18907377 (-)
LOC110537144 LOC106568168 other upstream 1098222 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1455783 19893417 ~ 19938584 (-)
G1047325 NA other upstream 2037509 20495565 ~ 20496428 (-)

Expression


Co-expression Network