rbp4l (purp)


Basic Information

Item Value
gene id rbp4l
gene name purp
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18486339 ~ 18488673 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622908.2
CACAAAACAGAGATCACTGAGTTCTACTTGCTGCTCATCTTTACAAAGAAAGCATGGGATCCTCAAAGCTGACTCTCCTCATGGTCCTGATGGCCTGCGTGGAACACACCTGGTCTGCCTCCTGCGTGGTCGACAGCTTCACAGTCAAGGAGGACTTTGAACCGAAGAGGTATGCAGGGAAGTGGTATGCCCTTCAGAAGAAGGACCCTGAGGGACTATTCCTCCAGGACAACATCTCCGCTGAGTACACCATTGATGATGACGGCACTATGACAGCCTCCTCCAAGGGACGTGTCACTCTCTTCGGGTTCTGGGTTGTGTGTGCTGACATGGCTGCCCAGTACAGTGTGCCTAACCCCACCACCCCCGGCAAGATGTTTATGAACTACCAGGGGCTGGCCAGCTACCTGTCCAGTGGAGGTGACAACTACTGGGTGATTGACACCGACTATGACAACTATGCCATCACCTACGCCTGCCGTACACTGAAGGAGGATGGAAGCTGCGAGGATGGTTACTCCCTGATCTTCTCCCGTAACCCACGTGGCCTACCCCCAGCCATCCAGCGCATTGTCCGTGGGAAACaggaggagatctgcatggcTGGCCAGTTCGAGCCTGTCCTGCAGTCCGGAGCTTGCTAAGTGGGCAGCACACCCTGTGCTCAATTCCTTAAACATGCTGGCATGAGAAGAGGCCTCCAGGGCCGATGGATGCATCCATAGCAGCGCTGTAGAAATGAATAGACCGTGTTGCGAGGCGGGAGGGAAGAAGCCCGCCTCAGCCACCCATTGTCTCAAGGGAAGGGTTGCTCAATTAGGTTGGTGTGTTCTGTCAAGTCAAGTGTGTGTGTTAAAATGTATCTTATTTTTTTTCAACAAATCTCTGAGTTGTATCCATGTTTGATCAAGACTGCATTTAAGCAAAAAGGCCTGagtgtgtgtggtatatggccaatataccatggctaagggctgttctaccacacgacgcaatgcggagtgccttGATACAGACCTTAGCCATGGTAAATGGCCATACATCACAAACCCCCGAGCAGCCTTTTTGCTATTATagactggttaccaatgtaattagagcagtaaaaataaatgctttGTCATACCCTTGGTA

Function

symbol description
purp 5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase

NR:

description
purpurin-like

GO:

id name namespace
GO:0006810 transport biological_process
GO:0005576 extracellular region cellular_component
GO:0005501 retinoid binding molecular_function
GO:0036094 small molecule binding molecular_function
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622908.2 True 1134 mRNA 0.51 5 18486339 18488673

Neighbor

gene id symbol gene type direction distance location
LOC100136215 s26a2 coding downstream 14909 18458747 ~ 18471430 (-)
LOC110537121 LOC106568150 coding downstream 28283 18439759 ~ 18458056 (-)
LOC110537119 LOC106568149 coding downstream 99226 18336851 ~ 18387113 (-)
LOC110537118 LOC106568147 coding downstream 188601 18289970 ~ 18297738 (-)
LOC110537117 LOC106568145 coding downstream 385458 18100033 ~ 18100881 (-)
LOC110537126 fyb coding upstream 24875 18513211 ~ 18538625 (-)
LOC118937637 LOC106611709 coding upstream 57112 18545785 ~ 18558011 (-)
ccdc80l2 LOC106568154 coding upstream 72083 18560756 ~ 18566092 (-)
fgf10a LOC106568156 coding upstream 234520 18723193 ~ 18746579 (-)
LOC110537130 LOC106568157 coding upstream 344446 18833119 ~ 18907377 (-)
G1044867 NA non-coding downstream 33643 18422833 ~ 18452696 (-)
G1044861 NA non-coding downstream 69815 18416286 ~ 18416524 (-)
G1044848 NA non-coding downstream 90966 18395070 ~ 18395373 (-)
G1044817 NA non-coding downstream 139824 18312585 ~ 18346515 (-)
G1044812 NA non-coding downstream 185957 18300130 ~ 18300382 (-)
G1044924 NA non-coding upstream 59541 18548214 ~ 18548590 (-)
G1045141 NA non-coding upstream 275247 18763920 ~ 18767027 (-)
G1045161 NA non-coding upstream 297634 18786307 ~ 18786571 (-)
G1045172 NA non-coding upstream 303348 18792021 ~ 18792235 (-)
G1044761 NA other downstream 293116 18192234 ~ 18193223 (-)
G1044692 NA other downstream 386617 18097563 ~ 18099722 (-)
G1044671 NA other downstream 427947 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 467581 18018104 ~ 18018758 (-)
G1045201 NA other upstream 325229 18813902 ~ 18815394 (-)
LOC110537144 LOC106568168 other upstream 1067605 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1425166 19893417 ~ 19938584 (-)
G1047325 NA other upstream 2006892 20495565 ~ 20496428 (-)

Expression


Co-expression Network