LOC118937637 (LOC106611709)


Basic Information

Item Value
gene id LOC118937637
gene name LOC106611709
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18545785 ~ 18558011 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005034900.1
CCCAGGATCTACATGCCAGACGTTTGATCTATCCCTGGAGTGAAAACTTACGGAGCCTTGACGGAGAGTTTGTGGAATATCCTGAGAGCAAGAGAGCATGTCTTGACGTGGGTGAATTGGAGACGGATGGGGGTCAGGGCTAACCGGCCCCTTTATCTGTAATAAATGAATAGTAAAAATGTTAAATTGATTATAACATGTTTTACACTGTATGTACTAAATATAATGAATTAAATAAATTGTTTTAAAGAGGTATCTCGCCTTTAACGAAGGGGCTCTGTCTTTTAGATCTATCATCATGCATGTCTCTGAGAAAAATCATTTCGGAAAAGATGTGTGTGCGGGCGTCTGCGTGcgagtgtaggtgtgtgtgtgtttcaaaacAAAAgggggtggaggtgtgtgttcaACAATGCCATGGCATTTGCACCCAAGGCTCTATCTCTCTCCACCTGTGGTTTTGGGGTCTCTAAACATTCCGAGGTCCTGCCACCCGAAAAAAACGTCATCCCCGCTCTGTAAGATCATTACAGAATATCTCTCCTTTGAGCCAAGACCGCGGAGCGAGGCTAGTGAAACAGATACTATCCCCTCTGTACGAATGGCCAAAAGCTTAACTCCAGACACCAGGCCAACAGCCCAGAACAGCTAAAAGATCATCCGTGAATCCGTCCTAATGGAGCTTTCTGAAGGGTATCCATCCATCCTTTACGCAGTTGCTCCGGGGAATAAATGATCTGGAACAGCCTTCGTTAGAAGTGTGTTCAGAGGAGCAACACGCATGCAGCCAGTCCCCATCACATTATTGTAGACCTGACATACCGCATTATGTACTCTGAACGACTATGGCGGAGAAGATGACATAGATGCTATTCTCCCATTCTGTACGAACGTTTTCTCAAACACACCGAGAACCGAGGATTTAAACATCCCGTCAACTCCCCCCCCTCGCTCCATATTCCAGACCCAAACAAGCAATGCACAACTCGTGCGCAAGTACATTGCGCAGAATCACCCCAGACCAAAAAGTGTTACTGGGCAGGGAACTTACTGCTTCAAGAAACGGCGCTCCATGGATACGACTCCAACGAGACATGCCTGGCAGAATCTGGAATACCTGGTGAAAAAAGTCAAGAGCCCCCGGTTTCTGCGATTCGTCAGAATAGCCCTCGTCAAAAAAGCAGAGGTAATTTAATTATGTATTGTTAATATGTAGCATTATATCTGAAATGTATTTGACATTTTGTATAATTTTAAAGgtaatcagaacagaagccaaatta
>XR_005034901.1
acacacacacacacacagaggaactcATTCACATGCACAAACAAAGACACTCCTCTACCCAAGGGCCACCAGCCCACGTACAGACTAGATAGATACCCTGGACTGTTCCCACTATGAATCCAACCTGACCCAGATGAGAACTATGATGATGTTACGTACGCCTCTgggaagagggaacgcaacaccctgctagaaTTCAACTCTCCGTGGAGTGAACAAGGACAGTGAAAGTGATGAAATATATGAAGATCTTGATGAAAGATGACTCCAACGAGACATGCCTGGCAGAATCTGGAATACCTGGTGAAAAAAGTCAAGAGCCCCCGGTTTCTGCGATTCGTCAGAATAGCCCTCGTCAAAAAAGCAGAGGTAATTTAATTATGTATTGTTAATATGTAGCATTATATCTGAAATGTATTTGACATTTTGTATAATTTTAAAGgtaatcagaacagaagccaaatta

Function

NR:

description
PREDICTED: uncharacterized protein LOC106611709

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005034900.1 False 1283 mRNA 0.45 4 18545785 18553302
XR_005034901.1 True 466 mRNA 0.42 4 18545785 18558011

Neighbor

gene id symbol gene type direction distance location
LOC110537126 fyb coding downstream 7160 18513211 ~ 18538625 (-)
rbp4l purp coding downstream 57112 18486339 ~ 18488673 (-)
LOC100136215 s26a2 coding downstream 74355 18458747 ~ 18471430 (-)
LOC110537121 LOC106568150 coding downstream 87729 18439759 ~ 18458056 (-)
LOC110537119 LOC106568149 coding downstream 158672 18336851 ~ 18387113 (-)
ccdc80l2 LOC106568154 coding upstream 2745 18560756 ~ 18566092 (-)
fgf10a LOC106568156 coding upstream 165182 18723193 ~ 18746579 (-)
LOC110537130 LOC106568157 coding upstream 275108 18833119 ~ 18907377 (-)
LOC110536808 NA coding upstream 380207 18938218 ~ 18949907 (-)
LOC110536809 amacr coding upstream 413404 18971415 ~ 18994913 (-)
G1044867 NA non-coding downstream 93089 18422833 ~ 18452696 (-)
G1044861 NA non-coding downstream 129261 18416286 ~ 18416524 (-)
G1044848 NA non-coding downstream 150412 18395070 ~ 18395373 (-)
G1044817 NA non-coding downstream 199270 18312585 ~ 18346515 (-)
G1045141 NA non-coding upstream 205909 18763920 ~ 18767027 (-)
G1045161 NA non-coding upstream 228296 18786307 ~ 18786571 (-)
G1045172 NA non-coding upstream 234010 18792021 ~ 18792235 (-)
G1045203 NA non-coding upstream 257500 18815511 ~ 18815929 (-)
G1045295 NA non-coding upstream 268627 18826638 ~ 18826877 (-)
G1044761 NA other downstream 352562 18192234 ~ 18193223 (-)
G1044692 NA other downstream 446063 18097563 ~ 18099722 (-)
G1044671 NA other downstream 487393 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 527027 18018104 ~ 18018758 (-)
G1045201 NA other upstream 255891 18813902 ~ 18815394 (-)
LOC110537144 LOC106568168 other upstream 998267 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1355828 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1937554 20495565 ~ 20496428 (-)

Expression


Co-expression Network