ccdc80l2 (LOC106568154)


Basic Information

Item Value
gene id ccdc80l2
gene name LOC106568154
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18560756 ~ 18566092 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622924.2
CTCAGCATCGAACACATTGAAGGCAGTCTCAGTCTGAAGAGGAGCTCCCACCAAGCATGCTGCTTAAGAGAGTAATGCTTTGAAGTTGAAAAAATTCCAGGAGTTTCCTGTAACAACGTTGGAGTATAATGTGAACCAGGAGCCGTGGAGTATTCCTCCTTATCCCCAGTCAAGCCAATCTGCTTGGGAGAGATATCATCACTTCAGCTGTGTGCTGCGTCTGCTTAAAGGCAGTTTCCCTGTGGATTATAAAGTGACCACCACCCCACCAAGGATGTCTAGGTTGCTCTGTGCTCTGCTTGTCCTTATGTCTCTGTGTAGTCACAGCCTAGGGGTTTCTGCCTCACAGCCAGGGAAGGGAAGACATAAGACCAGACCTCAGTATAAAGAACCTGCTGGTCTCCTGGCTCCGGAGGATGATCATGGCGGAGAGGGAGACCATGAGACCAGGACAGTCCTTGACCCAGAACAGGAATTCCTGTCTGATTTTGCAGGTAAGAAGCGTTTGTGGGTAATCACGGCCCCGTCGCACAGTGACAACTACCTCCGCATGATGGAGAAACAGATTCAGGACATGGAGCAGGAGGGGCTGAACTGTCGCCTGGCTGAGAGGGACACCTTCATTGTCACCATCATCCAGAATGCCATGATGGAAGGCAGGATCCAGAAGACCACCTTCCAAGGAGAGGCCACCATGGAGAGCATTGACTCAGACATGGTCACCAAGCTGCTGCATTACCTTGAGCTGGGGGATCAAGGCTTCTCCATGCTAGTCATGAAGAAGAACCTTAGGGTGAGTGAGCGGTTCCCCTACCCTGTCCGTGTGGAGGCCATCCTAGAGGTCATTGATCAGTTCCCCTTGCGCAAGCTGGAAAAACTCACCAGGAAGGGCTCCCCTCTGAAATGTAAAATCACCAAGAAGAGGCTGATGAAGAAAAAGATTCCTGTGAAAAAGAAGGTGTTCAGTCCCCAAATGCATGGAAACGTTACCTCTGTCACCCAGAGGAATACTGTGGCCAAGAAGGCTGCACTGAAGAGCAAAATTCAGGACATTCTCAGCGGTCGCTCCAGGTTCATCATTCGAAAGACGACCACTGATTCAAAAGGAACACAAGTATTCATCGCAGGGAAGGCAAACTCCAAAGCTGTGGGAAAGGACAACCAAAAGAAAAATGGAAATGTTTTTACAGAAATAAACACATATCCTTCTACtgtagagaaaagagaaagaaagactgTAGCCAACTCTAGAGATAATAAACCAGAGAACGTTGGCGGGGGAGAAGAATCCTTGGAGAAAAACAACTCCCCCAAAAAAGGCAAGGGAAAGAAAGATgggaagaaagggagagggagagggagagtgaagaaAAACCACAGAGAAGTGAATGACAACAATAAGAAAGCACTGATGAACTTTGTAGAGCATTTGAAGGGGAAGAGAAGACTTATGGTGATAGCCACGCCCAGTGCCAGCACACCTCAGTATgtccagcagagggaggagaacGAGCTTCATTTCTGTGACCTTGCCCTGAGAAAAGTTACTACGGCAACCATCCTGAGCTCAGGGCCTGACACTACCCTCACCCTGCACCACTACCAACTTGATTCTGAGACGCCATTCACCTCACTACCAGAGAAGTTCACTGACCCAGATCTCATCTCTCAACTGATGAAGCAGTATGGGATGTCCTCTAAGGTTTTCTCTATGACTATGACTGACTATGACCTGAAACCCAATGAAGTATTTGATGTACCTCCACCCTCATCTGCATTGATGGAATATGTTGACACCTTTACATCGCGACGAtctgaaatggagagagagagaaaaactccACTGGCCTGCTCCAAATCCCAAGAACAGGGCGGGGCATTGTTGAGGTTCATGTCTAAAAGGAGACTGCTGATCATCTCTACTCCATCTGAGGACGACTACTCCTTCCAACAGCAGCTCCAGGGGCTGAGAGGACAGGCCTGTCCCATGGGCGTCCGTCATTTTGCCTTGTTGAAGTTGATCGGAACAGGACCAACCGCCTCAGGCACTGTGGAACTGTTTCCACTCAATGGAAAGAGCCAAACGGAGAACGAGCCTTTGTCACGGGACGTGGTCACTGGTCTCCAGGACCAGCTGAAGATCAACCGGGAGTACTTCAGTATGCTGGTGGTGGGGAAGGACGGGGACGTGAAAGCCTGGTTCCCCTCGCCCATGTGGTCTCTGGCCAACATCTATGACCTGGTGGACTCCATGGAGCTGCGGCAGCAAGAAGAGAAGCTGCAGAGGACTTTAGGTATTCACTGCCCTGAGGACACTGGCGGTAGTTACCAAGGTTATGATGAGGAAGCAGATTACCACAGGTCAGAGGAGTAAAGGACAGTAAACAGCCCAAAGGTCTCAAAGACCCCATGGCAGTCAGCTCAAATGAATGGTTGTGGGTGAAAGTTTGACACAATAACAGATTGAACCATGAAAGgctttttattttaaatgtttttgcaaacatttatcAGAGGCGTGGCATTTGTAGTTAGAAATGGCCGACATTACGTAAATGGATCTACAATTGAAGAGTTCCAAAACGCtgtatatccattttcagaaatgttggtaaattagcttttattgtttaatGTAATATCAAATCATGACACGGGGTTGTTCAATAAcaaacaaatgtatttgtttaaaatctatcacttgatgcTTTCAGAGAGgcaaataatcatgttttttaACAAAACGCTATATACcggcctcactctcagagaaataagtTGTACTGGTTTTACACAGTGAAATGTTACAAATAACTACATTTCTAATAAAGAACAGTACAAATTATacatttatttgacatttttaaatgtataattcactacagtaatatgagatctgtatgtaaaacatttacatttgacattttagtcatttagcagatgctcttatccagagctacttacagtaagtgcattcatcttaagataactaggtgagacaaccacatatcacagtcagatatacaggatacaaactttccattccagctaaacaatggacaTATACTGTTttacccctcccccccccccccaaaaaaaaatatatatatatattacacacattaTGGTACCCATAAGCAATCATTGCTGATtaaaaaacacaaatgtaaaaATTTTATGGATGTAacgttttggaaataaactcttcaaaTACTTAATATGTTTCTTGAAATTAAAAAAAGGTTTGTTTTTATAA

Function

NR:

description
coiled-coil domain-containing protein 80-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622924.2 True 3256 mRNA 0.45 7 18560756 18566092

Neighbor

gene id symbol gene type direction distance location
LOC118937637 LOC106611709 coding downstream 2745 18545785 ~ 18558011 (-)
LOC110537126 fyb coding downstream 22131 18513211 ~ 18538625 (-)
rbp4l purp coding downstream 72083 18486339 ~ 18488673 (-)
LOC100136215 s26a2 coding downstream 89326 18458747 ~ 18471430 (-)
LOC110537121 LOC106568150 coding downstream 102700 18439759 ~ 18458056 (-)
fgf10a LOC106568156 coding upstream 157101 18723193 ~ 18746579 (-)
LOC110537130 LOC106568157 coding upstream 267027 18833119 ~ 18907377 (-)
LOC110536808 NA coding upstream 372126 18938218 ~ 18949907 (-)
LOC110536809 amacr coding upstream 405323 18971415 ~ 18994913 (-)
LOC110539127 LOC106568258 coding upstream 478032 19044124 ~ 19050623 (-)
G1044924 NA non-coding downstream 12166 18548214 ~ 18548590 (-)
G1044867 NA non-coding downstream 108060 18422833 ~ 18452696 (-)
G1044861 NA non-coding downstream 144232 18416286 ~ 18416524 (-)
G1044848 NA non-coding downstream 165383 18395070 ~ 18395373 (-)
G1045141 NA non-coding upstream 197828 18763920 ~ 18767027 (-)
G1045161 NA non-coding upstream 220215 18786307 ~ 18786571 (-)
G1045172 NA non-coding upstream 225929 18792021 ~ 18792235 (-)
G1045203 NA non-coding upstream 249419 18815511 ~ 18815929 (-)
G1045295 NA non-coding upstream 260546 18826638 ~ 18826877 (-)
G1044761 NA other downstream 367533 18192234 ~ 18193223 (-)
G1044692 NA other downstream 461034 18097563 ~ 18099722 (-)
G1044671 NA other downstream 502364 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 541998 18018104 ~ 18018758 (-)
G1045201 NA other upstream 247810 18813902 ~ 18815394 (-)
LOC110537144 LOC106568168 other upstream 990186 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1347747 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1929473 20495565 ~ 20496428 (-)

Expression


Co-expression Network