fgf10a (LOC106568156)


Basic Information

Item Value
gene id fgf10a
gene name LOC106568156
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18723193 ~ 18746579 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622926.2
agacagacagacagacagggatagcagctcagagaagagaaaagaagcagcactccaccactccactcaAAGGGACTCGGCTCAGAGAaacggagagaagagaaggagagctcCAGCTCACACTCTACTCTAACTCTCTCAGAGGGACCAAGGACACAGAAAGCCAGCGCTACCGCTCTCACTCCCTCACATAGaggagcacagcacagcagagagagagagagagatacactccAGCGAAGAGTCTCCATTGCACAGACAAGTGACTTCAGAGAAACAGCCAAAGAGAACAGAAGAAAACCAAGGATTACATGGGTCCCTTTTTCTCCCCTCCTTGGATTCTTCATTTTGATGAGAAAAAGCTTTAGTTTTTCTGTTTagaaattgtttattttattcattttttaaacatttttgctgTCTCCCCGTCCCCTCTTCTAACCCTCCCCTTATCTCATCCTCtccagaggtggtagaggtagttTCTCATTTGTATTTAATGAGGAGAGTGAGCGGTGGAGGGCGAGAGGTGTTTTGAGTTATGGCCGTTGACACATTCCTTTGGAACACGAGAGGAATAAGCAGCAGCAGTGTTGTCGTCGTCAGCCGCCGGGGGTTTCATCTCCCGCTCTCagcccttctccctctcccctctccagcaTGGTCCTTTCTGTGAGCctctctccagtcctcccagCTCCAGTACAATGTCCAGATGGACAGTGACTAAGGGTGCCGCCGCCTGGTCCTGCATTCGTCTGTCCCTCATCTCCACAATGCTCGTCCTCCTGCTCTACCCGTTGCCCTCCACGTGTCATCACAATGCACCTGGGGTCGCCACTCACTCCATGCTGCGCTTGCCCAGGGTGGCCAACACCTCTTCAGCTACTGTTGTGGGGAGGCATGTGCGCAGCTATAACCATCTCCAAGGAGACGTGCGCAAGAGGAAACTCTACTCCTATCAGAAGTTCTTTCTCAGGATTGATAAAAATGGCAAAGTCAATGGCACCAAAAACAAAGATGATCTTTACAgtGTGCTGGAGATCAAGTCAGTGGATGTTGGGATCGTGGCCATCAAGGGGCTCAGCAGTAACTTTTACCTGGCAATCAGCAAGAAAGGAGAGCTGTACGGCGCGAGGGACTTTGGTGTTGACTGTCGGTTGACCGAGCGGATTGAGGAGAACAGGTACAACACCTATGCCTCAGCAGAGTGGCGGAACAAGAAGAAGGCCATGTTCGTGGGGCTGAGCGCCAACGGCAAGCCCATGAGGGGCAAGAAAACACGAAGGAAAAACACTGCCACCCACTTCCTGCCCATAGTGGTGTAGCCAACTCATTGGACAGTTCCTTCCCCTGTGAATGTTTCACTGCACTGAGGAGAAAGACCGGAAACCTTCAAAGACATAATGGAGTCATATGGAGTCAACGTTTGAACTCATTATCATGAAGTCTGACTGATGATgccacatatttttttttaaagttatgaGTCGGCACAAGAGAAAATATTACATGTTTTCTGTGCCAAATAATTTTCAATTAATGAACTGTTGGAGACAAATCTCAATACTGAATAAGAGGACAAAAAAGAGACACTGATTCCAACAGCGTCACTGAAGACAGGGTCAAAGGGCAGAGTGTATCGTGTGTATTTGTCGTTGTGATGATCTATCGATGCAGTTATTTATTCTGTAGTAACTGATACGAGAAACTGAAATTGACACTCAAGCTTTGTGACCCAGTGAAGGGCTAGAtgtacaaacagacagacacattactgGAAGCACTTGGGTGACTAAGATGTGATGAAAGAGAAGCTGGGCCATGGAGTGAGTCAAATGCAGAGAATTTAGTCATGCAAGCACCATAGCATAAACAACCCTTACAAACATTATTAACATGCAAGTTCACTGTATTGGATATCTCTTTTCCTTTACCTGACTGctttaaaataaattatttattttatgtaaTATTTAAAGAAAccaaaaagacaaaaaaaaatggaTGAACAAATTCTTTTTTTAATCATATATGCTCTTCTTTTTAAATACTAATCTATCGTTTAAACATGAATCAAATAAATA

Function

NR:

description
fibroblast growth factor 10-like

GO:

id name namespace
GO:0048794 swim bladder development biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0035118 embryonic pectoral fin morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0048920 posterior lateral line neuromast primordium migration biological_process
GO:0060022 hard palate development biological_process
GO:0005576 extracellular region cellular_component
GO:0005104 fibroblast growth factor receptor binding molecular_function
GO:0008083 growth factor activity molecular_function

KEGG:

id description
K04358 FGF; fibroblast growth factor

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622926.2 True 2087 mRNA 0.45 3 18723193 18746579

Neighbor

gene id symbol gene type direction distance location
ccdc80l2 LOC106568154 coding downstream 157101 18560756 ~ 18566092 (-)
LOC118937637 LOC106611709 coding downstream 165182 18545785 ~ 18558011 (-)
LOC110537126 fyb coding downstream 184568 18513211 ~ 18538625 (-)
rbp4l purp coding downstream 234520 18486339 ~ 18488673 (-)
LOC100136215 s26a2 coding downstream 251763 18458747 ~ 18471430 (-)
LOC110537130 LOC106568157 coding upstream 86540 18833119 ~ 18907377 (-)
LOC110536808 NA coding upstream 191639 18938218 ~ 18949907 (-)
LOC110536809 amacr coding upstream 224836 18971415 ~ 18994913 (-)
LOC110539127 LOC106568258 coding upstream 297545 19044124 ~ 19050623 (-)
LOC110536810 LOC106568158 coding upstream 319454 19066033 ~ 19077328 (-)
G1044924 NA non-coding downstream 174603 18548214 ~ 18548590 (-)
G1044867 NA non-coding downstream 270497 18422833 ~ 18452696 (-)
G1044861 NA non-coding downstream 306669 18416286 ~ 18416524 (-)
G1044848 NA non-coding downstream 327820 18395070 ~ 18395373 (-)
G1045141 NA non-coding upstream 17341 18763920 ~ 18767027 (-)
G1045161 NA non-coding upstream 39728 18786307 ~ 18786571 (-)
G1045172 NA non-coding upstream 45442 18792021 ~ 18792235 (-)
G1045203 NA non-coding upstream 68932 18815511 ~ 18815929 (-)
G1045295 NA non-coding upstream 80059 18826638 ~ 18826877 (-)
LOC110537121 LOC106568150 other downstream 275942 18439759 ~ 18458056 (-)
G1044761 NA other downstream 529970 18192234 ~ 18193223 (-)
G1044692 NA other downstream 623471 18097563 ~ 18099722 (-)
G1044671 NA other downstream 664801 18056111 ~ 18058392 (-)
G1044649 LOC106568140 other downstream 704435 18018104 ~ 18018758 (-)
G1045201 NA other upstream 67323 18813902 ~ 18815394 (-)
LOC110537144 LOC106568168 other upstream 809699 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 1167260 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1748986 20495565 ~ 20496428 (-)

Expression


Co-expression Network