LOC110539124 (LOC106568242)


Basic Information

Item Value
gene id LOC110539124
gene name LOC106568242
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18933045 ~ 18935001 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021626096.2
GTCCCTTCATTTCTTCATGATGATATAACCGTTCAAAACTTGATAATGGTCATCTGTGATCGTGATTCGACCATTTCAAAGCGGATTTGGCATCTAGcaggttgttgtgtgtgtttctgcaagACTCAACAAGAACACTACCCATAACATTGTGAGAGAGACCAAGCTGCAGCAGGTGCGTCTCGACACTTGGGATACCCATAACATCCGAGGCAACTGTCAGGACATGAAATGGATTTTCTGAGCGGCAGCGGTGCGGGGCTGAGGTCGGAGATGCATGGGGAACAAAGCGAGGAAGGTTCAGGATTATATCCTGTTGCTGACTTCAACTTCTCTTTCATGCTTAACGAAACGAACCAGTCCTTTGGAGAGTACGCTCACTTGTCTGATTTGGAGAAAAGTTATTTATTCGGGGATGGATCCGCCGTCCTGAGAATAATAATCTCTGTGATTTACTCTGTGGTCTGTACCTTGGGGTTGATAGGAAACATCCTTGTTTTATATCTCATGAAGTCTAAACAAGTATGGAAGAAATCGTCCATTAACTTTTTCGTGACGAGTTTAGCGTTGACTGATTTCCAGTTTGTATTAACTCTTCCTTTTTGGGCAGTGGAGAACGCTTTGGACTTCACCTGGCTTTTTGGAAAAGCCATGTGCAAGATAGTGTCTTACGTGACAGCGATGAATATGTACGCAAGTGTGTTTTTCCTGACTGCTATGAGTGTGGCACGGTACTGGTCGGTTGCATCGGCTCTCAAGAGCAGGCGGCGCCGTCACCGCTGCTGCTCCGCGCGCTTTATGAGCGTTGTTATATGGGTTGCTGCTATATCCGCAGCTTTGCCCCATGCGGTGTTCTCCACAACGGCGACTGTCTCCAACGAGGAACTGTGCCTTGTTAAATTTCCAGACACCGTTGACGCACAATTCTGGCTTGGACTTTACCATAGTCAAAAAGTACTGATCGGGTTTCTAATACCGCTGGGGATCATCTCCGTCTGCTACCTGCTGCTTTTGCGCTTCATCACATCCAGGAATGTGAATACCTCCAGCGCAAAGAGGCGCTCCAAAGTGACAAAATCTGTGACTATAGTGGTTCTGTCATTCTTCCTCTGTTGGTTGCCGAACCAGGCACTAACGGCGTGGGGAATTCTCATAAAACTCAACTTTGTGCATTTCAGTTGGGCATATTACACCACGCAGGCATATGTATTcccagtgtctgtctgtttggcGCACTCTAACAGCTGTCTAAACCCCATATTATATTGTCTAATGAGAAGAGAGTTCAGAAAGGCTTTGAAAAAACTTTTTTGGCAAATAACTTCTCCATCCGTGACCAACATGAGACCATTTACGGCGACGACCAAGCCAGAGCAAGACGAGCATGGACATGCGTTGGTACCGTTAAGTCCGGCAGAGCCAGCCTTGGTTTTCTATCCACCTGGTGTTGTCATTTACAATGGGAGAAACGATATGCTCCCGAACAGTACGTAGTACATGCAGCCTACCAAGCTGTCAACGGTGCCAAGTCGATTTGTTTGGATGTATTAATGTGTTGatcgatttatttatttattaaatatgtatacatgtatttatttatttctatcAACACTATTTTTGTCAATTTTACGCATCAGTGAGAAGTGTCATGCCCTGGACTGATTGAAGCCAAAACTTGCCTAGACAGATTCAGAAATGTATTGTTGAGACCTTTTCCAATGCCACTCAATCGTGTTACAACTGAATAACGGGCATTTCCCTCTTCGAAATGTGTTTCATAGATGCACATCATTCATGTGTAAAATAAGTCGGTCGGTTAATCTTATGTAAATTGTGGGCTTTAATGTCTATGTGTGGCACATCAAAATAAAGACCTGGATCATCTTGACATACACAGCTTGATAGATTACAACTGTGATGTGGTAAATAAATCTTACACATGCTC
>TU1191307
AGAGGATGGGTCCCTTCATTTCTTCATGATGATATAACCGTTCAAAACTTGATAATGGTCATCTGTGATCGTGATTCGACCATTTCAAAGCGGATTTGGCATCTAGcaggttgttgtgtgtgtttctgcaagACTCAACAAGAACACTACCCATAACATTGTGAGAGAGACCAAGCTGCAGCAGGTGCGTCTCGACACTTGGGATACCCATAACATCCGAGGCAACTGTCAGGACATGAAATGGATTTTCTGAGCGGCAGCGGTGCGGGGCTGAGGTCGGAGAT
>TU1191308
AATGTGAATACCTCCAGCGCAAAGAGGCGCTCCAAAGTGACAAAATCTGTGACTATAGTGGTTCTGTCATTCTTCCTCTGTTGGTTGCCGAACCAGGCACTAACGGCGTGGGGAATTCTCATAAAACTCAACTTTGTGCATTTCAGTTGGGCATATTACACCACGCAGGCATATGTATTcccagtgtctgtctgtttggcGCACTCTAACAGCTGTCTAAACCCCATATTATATTGTCTAATGAGAAGAGAGTTCAGAAAGGCTTTGAAAAAACTTTTTTGGCAAATAACTTCTCCATCCGTGACCAACATGAGACCATTTACGGCGACGACCAA

Function

NR:

description
relaxin-3 receptor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021626096.2 False 1948 mRNA 0.44 1 18933054 18935001
TU1191307 False 284 lncRNA 0.48 1 18933045 18933328
TU1191308 True 335 lncRNA 0.44 1 18934086 18934420

Neighbor

gene id symbol gene type direction distance location
nnt LOC106568155 coding upstream 285193 18578414 ~ 18647861 (+)
LOC110537124 LOC106568151 coding upstream 420999 18492792 ~ 18512055 (+)
LOC118937636 NA coding upstream 449309 18473010 ~ 18484225 (+)
si:dkey-247m21.3 LOC106568256 coding upstream 493825 18397129 ~ 18439229 (+)
tnksa LOC105014743 coding upstream 676740 18101983 ~ 18256314 (+)
LOC110537131 plchb coding downstream 155152 19088010 ~ 19100184 (+)
LOC110537140 LOC106568164 coding downstream 474649 19409650 ~ 19433994 (+)
LOC110537141 LOC106568166 coding downstream 499893 19434894 ~ 19445330 (+)
LOC110537145 LOC106568170 coding downstream 636769 19571770 ~ 19576332 (+)
LOC110537147 LOC106568174 coding downstream 689237 19624238 ~ 19644638 (+)
G1045359 NA non-coding upstream 1729 18930803 ~ 18931325 (+)
G1045356 NA non-coding upstream 10726 18922108 ~ 18922328 (+)
G1045281 NA non-coding upstream 12473 18920339 ~ 18920581 (+)
G1045277 NA non-coding upstream 18040 18914805 ~ 18915014 (+)
G1045235 NA non-coding upstream 73684 18859154 ~ 18859370 (+)
G1045408 NA non-coding downstream 25527 18960528 ~ 18961150 (+)
G1045428 NA non-coding downstream 41772 18976773 ~ 18977067 (+)
G1045432 NA non-coding downstream 48591 18983592 ~ 18983881 (+)
G1045453 NA non-coding downstream 61134 18996135 ~ 18996358 (+)
G1045463 NA non-coding downstream 68270 19003271 ~ 19003562 (+)
G1044317 NA other upstream 539713 18392646 ~ 18393341 (+)
G1044265 NA other upstream 636652 18295930 ~ 18296402 (+)
G1044201 NA other upstream 855754 18075802 ~ 18077300 (+)
G1044056 NA other upstream 1045137 17886653 ~ 17887917 (+)
G1044002 NA other upstream 1203800 17721093 ~ 17729254 (+)
G1045418 NA other downstream 30567 18965568 ~ 18965942 (+)
G1046724 NA other downstream 1209178 20144179 ~ 20147414 (+)
G1046823 NA other downstream 1347885 20282886 ~ 20293851 (+)
G1046929 NA other downstream 1574268 20509269 ~ 20511519 (+)
LOC110537158 LOC106568186 other downstream 1755826 20667957 ~ 20694090 (+)

Expression

LOC110539124(LOC106568242) Expression in all Baseline Samples

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LOC110539124(LOC106568242) Expression in each Bioproject

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LOC110539124(LOC106568242) Expression in each Sample
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Co-expression Network