LOC110536808


Basic Information

Item Value
gene id LOC110536808
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18938218 ~ 18949907 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110536808
atgtgtgtgtctctaccctGTTTCTGCCTGCAGAAGAAGAGGATAACTCTGAAGTCCTGTATCCTGGCTATGATTAACATACCCAGTCACTACCGCTGTCTCTGTGTCACTCACTTGCTGGGATGGACCATCTTCCTCTGCAACAGGCTCTTCTTCACAGACTTcatggGACAGATTGTGTATAAGGGCAACCCGTATGCGGACCATAACTCTACAGCCTATGAGCGGTATGAGAGGGGGTGGAGATTGGATGCTGGGGTCTCTGTATCAACTCTGTCTCCTCTGCTCTCTATTCCTATGTCCAGAGGCTGCTGCAGCCCTTCGTTGATCTGAAGGGGCTCAACTTTGTGGGATACTTTGTGTTTGGTCTGGGCATCAGTCTGATCAGCCTGATCCCCAACATCATCACCACCCTCATCCTGTCTTCGGAGTCATGTCCAGCACCTTGTACACCATCCCCTTCAACCTCATCTCAGAGTACCATCAGCAGGAGGAGgagcagacGAACCTGGGGAAAGGTAATCTTGCTGGACAGGATCGAGGCACCGGCATGGATTGTGCAGCGCTCACGTGTATGATGCAGCTGGCTCAGATCATCGTAGAGGCGGGACTGGGTCGTTGGTCAACATGGCAAGAAGTGTGATTGTGGTGGTCCTCTTCACATCAACAATGTCTTTACTTGGTTGTCTGTTCATCGCCCTCCACATCAGATACGTGGAATAATCTCTTTTAATAAAGATATTTACGAAGA

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0009416 response to light stimulus biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110536808 True 751 mRNA 0.50 5 18938218 18949907

Neighbor

gene id symbol gene type direction distance location
LOC110537130 LOC106568157 coding downstream 30841 18833119 ~ 18907377 (-)
fgf10a LOC106568156 coding downstream 191639 18723193 ~ 18746579 (-)
ccdc80l2 LOC106568154 coding downstream 372126 18560756 ~ 18566092 (-)
LOC118937637 LOC106611709 coding downstream 380207 18545785 ~ 18558011 (-)
LOC110537126 fyb coding downstream 399593 18513211 ~ 18538625 (-)
LOC110536809 amacr coding upstream 21508 18971415 ~ 18994913 (-)
LOC110539127 LOC106568258 coding upstream 94217 19044124 ~ 19050623 (-)
LOC110536810 LOC106568158 coding upstream 116126 19066033 ~ 19077328 (-)
LOC110537133 LOC106563626 coding upstream 129747 19079654 ~ 19085444 (-)
abraxas1 ccd98 coding upstream 136445 19086352 ~ 19090080 (-)
G1045365 NA non-coding downstream 3989 18934021 ~ 18934229 (-)
G1045364 rxfp3 non-coding downstream 4235 18933704 ~ 18933983 (-)
G1045363 LOC106568242 non-coding downstream 4619 18933207 ~ 18933599 (-)
G1045360 NA non-coding downstream 6951 18930894 ~ 18931267 (-)
G1045351 NA non-coding downstream 24451 18913080 ~ 18913767 (-)
G1045407 NA non-coding upstream 9352 18959259 ~ 18959575 (-)
G1045426 NA non-coding upstream 22386 18972293 ~ 18972547 (-)
G1045427 NA non-coding upstream 24482 18974389 ~ 18974626 (-)
G1045429 NA non-coding upstream 27710 18977617 ~ 18977853 (-)
G1045431 NA non-coding upstream 29209 18979116 ~ 18979377 (-)
G1045201 NA other downstream 122824 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 490967 18439759 ~ 18458056 (-)
G1044761 NA other downstream 744995 18192234 ~ 18193223 (-)
G1044692 NA other downstream 838496 18097563 ~ 18099722 (-)
LOC110537144 LOC106568168 other upstream 606371 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 963932 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1545658 20495565 ~ 20496428 (-)
LOC110537156 LOC106568185 other upstream 1559709 20488123 ~ 20599476 (-)
G1047473 NA other upstream 1751633 20701540 ~ 20702040 (-)

Expression


Co-expression Network