LOC110536809 (amacr)


Basic Information

Item Value
gene id LOC110536809
gene name amacr
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 18971415 ~ 18994913 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622488.2
ATGAGATTGGACCTGCGGCGTGCCTACAGTTTGTTGAAGAACCGGGCCCAGTGGAGCTGCTCGATGGCTGACGGCACCAGCGGGAGAGGGTCGAACCTGACTAATGGAGTTATGGAGAAGCTGGGCATGGGTCCAGAGGAGATACTGAAGGAGAACCCTCGTCTGATCTACTCATGCCTCACTGGCTACGGCTTGAGTGGAGCCAAGGCTGCTGGCCATGACATCAACTACCTCGTCATGTCAGGCTTGTTCTCCATGTTGGGCCGGAGCCATGAGAAGCCCTACGCTCCTCTGAACCTGGTGGCAGACCTTGCGGGCGAGGGTCTGACGTGTGCCTTCGGGGTGGTCCTGGTCCTGCTGGAGAGGACCAGGTTGGGCAGAGGGCAGGTCATTGATGCCAGCATGGAGAGGGCCTCCTTCCACAGGGACGCCCAGCGAGAGGTGACCCCGAGCCCCgcacctgtcctgtcctgtcccgcACCCCTGCTGACCCCTGCCTGGCCCGGGACACCTTCATAG

Function

symbol description
amacr Predicted to enable CoA-transferase activity. Human ortholog(s) of this gene implicated in alpha-methylacyl-CoA racemase deficiency; congenital bile acid synthesis defect 4; and urinary bladder cancer. Orthologous to human AMACR (alpha-methylacyl-CoA racemase).

NR:

description
alpha-methylacyl-CoA racemase-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622488.2 True 519 mRNA 0.61 5 18971415 18994913

Neighbor

gene id symbol gene type direction distance location
LOC110536808 NA coding downstream 21508 18938218 ~ 18949907 (-)
LOC110537130 LOC106568157 coding downstream 64038 18833119 ~ 18907377 (-)
fgf10a LOC106568156 coding downstream 224836 18723193 ~ 18746579 (-)
ccdc80l2 LOC106568154 coding downstream 405323 18560756 ~ 18566092 (-)
LOC118937637 LOC106611709 coding downstream 413404 18545785 ~ 18558011 (-)
LOC110539127 LOC106568258 coding upstream 49211 19044124 ~ 19050623 (-)
LOC110536810 LOC106568158 coding upstream 71120 19066033 ~ 19077328 (-)
LOC110537133 LOC106563626 coding upstream 84741 19079654 ~ 19085444 (-)
abraxas1 ccd98 coding upstream 91439 19086352 ~ 19090080 (-)
LOC110537135 LOC106568160 coding upstream 292982 19287895 ~ 19291902 (-)
G1045407 NA non-coding downstream 11840 18959259 ~ 18959575 (-)
G1045365 NA non-coding downstream 37186 18934021 ~ 18934229 (-)
G1045364 rxfp3 non-coding downstream 37432 18933704 ~ 18933983 (-)
G1045363 LOC106568242 non-coding downstream 37816 18933207 ~ 18933599 (-)
G1045360 NA non-coding downstream 40148 18930894 ~ 18931267 (-)
G1045495 NA non-coding upstream 36968 19031881 ~ 19032142 (-)
G1045671 NA non-coding upstream 103341 19098254 ~ 19100232 (-)
G1045689 NA non-coding upstream 122222 19117135 ~ 19117372 (-)
G1045201 NA other downstream 156021 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 524164 18439759 ~ 18458056 (-)
G1044761 NA other downstream 778192 18192234 ~ 18193223 (-)
G1044692 NA other downstream 871693 18097563 ~ 18099722 (-)
LOC110537144 LOC106568168 other upstream 561365 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 918926 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1500652 20495565 ~ 20496428 (-)
LOC110537156 LOC106568185 other upstream 1514703 20488123 ~ 20599476 (-)
G1047473 NA other upstream 1706627 20701540 ~ 20702040 (-)

Expression


Co-expression Network