abraxas1 (ccd98)


Basic Information

Item Value
gene id abraxas1
gene name ccd98
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 19086352 ~ 19090080 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021622934.2
ATGAAAAAGGCGTGTGCATTAACGCAATTCGACAaatgcactccttctaaacaacgccattttttaaaactttggcaAAGCGTCAAGTGTATTCAACTTAGTGCACTGTGTTCGTAACAGAttgtagttttgggaacagaacaATGTATTGGAGATCAGATGTTTCATCGATGATAAAATTAGCAGAATGTCAGTCCAGTTTCACCTTGTCACATCCTCTCCCACTACCCGCGACTGaacttcctctcactaccatatttggtggtgAGAAAACGTTCTAAACGGATGCTTCAGCTTTATAGCCCCTGTGACGTGTCTGGGTTACTCCTTATGTTTGTGTGGTAACACTTTTGATGTTGTCTTTCTGACAAAAAGAAGCATGGAGGACTCAAACTCTTATATTCGCGTCTCCGGATTTGTTCTTGGTTCATTGATGTTTCAGCACTTGAACAGTGATTCTGATGTGGAAGGTCTCATTCTCGGGGAGACCAAAGCTGAAGAGCGAAGCAACATCACTGACTCTCAAATCGACAACATACAGTTTGAGCATACAATAAACATTCAGAAACACATATCATGTCGCAAGCTCAATAGCTTCTATAATAGAATAGGGGAGGTGAACCAGGATGAAATAAGGCACATTTTATCCAACTATAAGGAGGAGAATGTGATTGGTTGGTATAAACAGCGGAGAAACACAGATCAACAAATTACCTTCAGAGAGCAAGTAGTCCACGAGAACCTGAAGAGAGCACTCTCCAATCACGAGCTGATCTTTCTGCTACTGACACCCAGTGAGATCACAACATCAGGCTCCACTCACAAACTGGAGTATGCAGTCTTCAGATCACATGGCAGtcagTATTGCAGTGTACCTGTCCTGGTCAGCAACCTGGGTTTGTTGGAAGAGCAGGACTACTGGAGACTCTCTGCATCTTGTTCATCAGTCAACTACAACCATGCTGTTAGGAAACACAGATCTAAATTCTTCTCCTCCGATGGATCTCTGCATGAGGTGGATGAGATTAATGACATGAACAACTCCTTGCAGGGTGAACTGAAGATGGCATGTAAGAAagtggaggagagtgaacgattGGTCGAGAAGCTGCTTGCAGACGTTTCTGATCTAAGAAGGATGGTCAATGATAGGAAACAAGAGCTGGGAGAAATCTCAGCAGATGGAGCCTCCACCCCAGCACAGCCCCAGGAGAATGTGCTGCTCTGTGAGGTCATCAAAACACTATTTCCTGGGGCATCTCTACTCCAAACGCAGGCTCTAAACTTCCAGGGGTTTCCATTGCCTGAGTTCTGCTGCAGCACTGACCATGGCATAGACATTGCTACAACACTGCCTTTGATCCTGAGTCATACACTCCCTAAAGCCAGGAAGGGGAGgcttgggagaggtggaggtacaTCCTGGAGAAAACGTCCCCTTCGTGAATCATCTGAGGTGCCCAAGAGGAGGAAAGGCATGCTGGAGGAGACTGAGGAGTCTTTGTCAGTCAGTGGGTCCGAGACCGAGGAGGATTTGATCCCAGCCAATCAGAACGGAAATGATTTAGATGTGTCCAATTCCCCCGTCTTCTGAGGACCATATGGACCGCTCAAGAATAGTCACTTTGCATTAAATGTCACTGTGTATGGATTATAGGAAATTCTGTGACATTCCCCTGTAACAGTCCTCCATCAATAACTGAAACTTGATGTTTGCAGGGATGCCTTCAATTAGCTTATTTTTAGGGGCAACATGTTTTATTTAGAAGTGACTGTCCAAGTTATTGATTATAATAACTTTAGTTTATCAACAAATTTTTTATATTCAAGCTGTTATTGAACTTGtacataattacataaaattaTTTTCACATGT

Function

NR:

description
BRCA1-A complex subunit Abraxas

GO:

id name namespace
GO:0006302 double-strand break repair biological_process
GO:0045739 positive regulation of DNA repair biological_process
GO:0031572 G2 DNA damage checkpoint biological_process
GO:0010212 response to ionizing radiation biological_process
GO:0070531 BRCA1-A complex cellular_component
GO:0031593 polyubiquitin modification-dependent protein binding molecular_function

KEGG:

id description
K20774 FAM175A, ABRA1; BRCA1-A complex subunit Abraxas

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021622934.2 True 1876 mRNA 0.43 9 19086352 19090080

Neighbor

gene id symbol gene type direction distance location
LOC110537133 LOC106563626 coding downstream 908 19079654 ~ 19085444 (-)
LOC110536810 LOC106568158 coding downstream 9024 19066033 ~ 19077328 (-)
LOC110539127 LOC106568258 coding downstream 35729 19044124 ~ 19050623 (-)
LOC110536809 amacr coding downstream 91439 18971415 ~ 18994913 (-)
LOC110536808 NA coding downstream 136445 18938218 ~ 18949907 (-)
LOC110537135 LOC106568160 coding upstream 197815 19287895 ~ 19291902 (-)
LOC110537136 LOC107722835 coding upstream 208013 19298093 ~ 19301084 (-)
LOC118937912 NA coding upstream 208183 19298263 ~ 19298332 (-)
LOC118937911 NA coding upstream 209369 19299449 ~ 19299518 (-)
LOC118937913 NA coding upstream 210246 19300326 ~ 19300395 (-)
G1045495 NA non-coding downstream 54210 19031881 ~ 19032142 (-)
G1045448 NA non-coding downstream 93928 18992204 ~ 18992424 (-)
G1045435 NA non-coding downstream 101755 18984376 ~ 18984597 (-)
G1045671 NA non-coding upstream 8174 19098254 ~ 19100232 (-)
G1045689 NA non-coding upstream 27055 19117135 ~ 19117372 (-)
G1045693 NA non-coding upstream 30170 19120250 ~ 19120501 (-)
G1045694 NA non-coding upstream 34205 19124285 ~ 19124555 (-)
G1045697 NA non-coding upstream 38496 19128576 ~ 19128798 (-)
LOC110537130 LOC106568157 other downstream 181246 18833119 ~ 18907377 (-)
G1045201 NA other downstream 270958 18813902 ~ 18815394 (-)
LOC110537121 LOC106568150 other downstream 639101 18439759 ~ 18458056 (-)
G1044761 NA other downstream 893129 18192234 ~ 18193223 (-)
G1044692 NA other downstream 986630 18097563 ~ 18099722 (-)
LOC110537144 LOC106568168 other upstream 466198 19550953 ~ 19569458 (-)
LOC110536814 LOC106568181 other upstream 823759 19893417 ~ 19938584 (-)
G1047325 NA other upstream 1405485 20495565 ~ 20496428 (-)
LOC110537156 LOC106568185 other upstream 1419536 20488123 ~ 20599476 (-)
G1047473 NA other upstream 1611460 20701540 ~ 20702040 (-)

Expression


Co-expression Network